PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084456.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 1116aa    MW: 124600 Da    PI: 6.9846
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-09428472246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++WT+ Ed+ l++ v+q G  +W  Ia+ + ++Rt+ qc  r+q 
   XP_011084456.1 428 NPWTAMEDKNLLHIVQQKGLSNWIDIAASLRTNRTPCQCLARYQR 472
                      69*****************************************96 PP
2Myb_DNA-binding452.5e-14481526248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT++Ed +l  av+ +G  +W ++a+ m  gRt+ qc +rw+k l
   XP_011084456.1 481 REWTKDEDNQLRSAVEIFGESNWQLVASVME-GRTGTQCSNRWLKTL 526
                      68*****************************.***********9975 PP
3Myb_DNA-binding605.3e-19534578247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+WT eEd++l+ av+++G++tWk++ar+++ gRt  qc++rw + 
   XP_011084456.1 534 GKWTSEEDKRLKVAVTLFGPRTWKKVARCVP-GRTQVQCRERWVNC 578
                      79*****************************.***********986 PP
4Myb_DNA-binding46.39.9e-15586629247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eEd +l  a++++G   W+++a++++ +Rt++qc  rw  +
   XP_011084456.1 586 SKWTEEEDSKLEAAIAEHGYC-WSKVAACIP-HRTDNQCWRRWKVL 629
                      58*****************99.*********.***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.214323421IPR017877Myb-like domain
SMARTSM007175.6E-4327423IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-10330346IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-10394434IPR009057Homeodomain-like
SuperFamilySSF466891.45E-11402457IPR009057Homeodomain-like
PROSITE profilePS500909.001422474IPR017877Myb-like domain
SMARTSM007173.2E-6426476IPR001005SANT/Myb domain
PfamPF002497.2E-8428472IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-12435480IPR009057Homeodomain-like
SuperFamilySSF466893.73E-20456529IPR009057Homeodomain-like
PROSITE profilePS5129415.901475526IPR017930Myb domain
SMARTSM007171.1E-14479528IPR001005SANT/Myb domain
PfamPF002494.8E-13481525IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-16481529IPR009057Homeodomain-like
CDDcd001671.42E-12482526No hitNo description
PROSITE profilePS5129421.642527583IPR017930Myb domain
SuperFamilySSF466893.8E-26531626IPR009057Homeodomain-like
SMARTSM007177.9E-14532581IPR001005SANT/Myb domain
PfamPF002491.3E-15534578IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-20534584IPR009057Homeodomain-like
CDDcd001676.41E-12535577No hitNo description
SMARTSM007179.1E-14584632IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-16585628IPR009057Homeodomain-like
PROSITE profilePS5129417.91586634IPR017930Myb domain
CDDcd001676.22E-12587630No hitNo description
PfamPF002498.3E-13587628IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1116 aa     Download sequence    Send to blast
MPPLNEEFSD TDSDDGFSED MEALKRACQL TEENHIDHQL AATEVAGVSA SEEAESDEEG  60
EDDLQLVRSI QKRFAVSMDM EEEPLTMKPL CTLPPDWSDN DDCEDDYETL RAIQRRFAAY  120
NDGGLKDNLE DFVHRPVQVG ATIIDSEKET SDSFPERTNA REGFLNCVDK NEPTGQKSEA  180
CDDAGRLHSD LLEWNGPGID DVVGLPLKSS HFPKSAVAFV DAIKKNRSCQ KLIRNKMMQM  240
EARIEELKKL MELVKILRDF QVACKKRTGR ALSQKKDARV QLISVPKLRA NTKLNDQKIP  300
AVSKGPPENL QVAHYKEALA TFAVSVSRVK WSKEESENLV KGVRQQFQGM LLQRSVDLLS  360
EADGSYDSSN VDSIMLSIKD IDITPDKIRQ FLPKVNWEQL AAMYLPGRSG AECQARFLNF  420
EDPLINHNPW TAMEDKNLLH IVQQKGLSNW IDIAASLRTN RTPCQCLARY QRSLNASILK  480
REWTKDEDNQ LRSAVEIFGE SNWQLVASVM EGRTGTQCSN RWLKTLHPAR QRVGKWTSEE  540
DKRLKVAVTL FGPRTWKKVA RCVPGRTQVQ CRERWVNCLD PLLNMSKWTE EEDSKLEAAI  600
AEHGYCWSKV AACIPHRTDN QCWRRWKVLF PNEVPLHEAA RKIQKAALIS NFVDRESEKP  660
ALGPSDFVLP EPHRLTGSEN VDPARRKKRR SRWRKADELA EKDAPCGDIC SEQSPRLTNG  720
SEVDHAQGRS TRTKGRGTNS RSVKKVAGSS SYSDLSSCPH TDVKPESVDG AHAEHAICQG  780
ERATEPVSEQ CGHSNPTEEC LQPTPRCSNL PRITVAAELG GHDATQSMKV SKLHPRRRHG  840
KTVGGVPETL AKQVGDATIP KTNKKMVKEK KKQNDATDDH ASSFPDSASL MDIRKEMEAV  900
GRIKARKSKR TEGGDCVSLD VDPSVDLAPA HLQTNTDVHG DGSLEVLGYK SSSCQVEVIP  960
DQDVRSNTAS AVSGNLHDSA IYSERTGELQ HKENAIMVSE MEVDNDTLGS FLVKSGADGT  1020
KFSSAKVDKL LRKVKKTSQV HSNSRAANIS VSNQLKRQRL KNGTETSVEA GSRNKDEARP  1080
NQVLEAEAGD DTTLANFYNR VKKRRTDAPQ MQQPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-293996206155MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-293996206155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1685691RKKRRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084456.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084456.10.0uncharacterized protein LOC105166700 isoform X1
RefseqXP_020552481.10.0uncharacterized protein LOC105166700 isoform X1
RefseqXP_020552485.10.0uncharacterized protein LOC105166700 isoform X1
TrEMBLA0A2G9HYB10.0A0A2G9HYB1_9LAMI; Uncharacterized protein
STRINGMigut.D01451.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108762124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1