PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011084446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 611aa MW: 66362.2 Da PI: 8.2582 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 340 | 4.1e-104 | 238 | 611 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++ L+++A avs+g+le a +L+rl++ a+p+g++ qR++a+++ AL++r++ + + lp+ + ++e++ + +++++vsP++k++++ XP_011084446.1 238 KQSLIDAAVAVSEGKLEVAAGILTRLQQVANPRGSSEQRVTAHMVSALKSRVNP---TEQHRLPVGDLY---TKEHALSIQMLYDVSPCFKLGFM 326 578**************************************************9...444556666665...78999999*************** PP GRAS 97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 +aN aIlea+ + ++vH++Dfdi+ G+Q++ Ll+aL +++ + + l+iT++ ++ +g++++l+ +ge L+ +A+++gv + f+v + XP_011084446.1 327 AANLAILEATWDQgfNKVHVVDFDIGRGGQYMHLLHALVAKKpadkrAAAVALKITTFTDSVPGDEHRLKMVGEGLKALASKIGVCLTFSV-KNS 420 **********77767***********************96665765445669********9999**************************9.999 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +++dl+ ++L v+++EalaVn++++l++l desv++e++rde+L+ vk+lsP+v +vveq+++ n++++ +r+ e++eyy alf+slea+++re+ XP_011084446.1 421 TTTDLSRDNLGVDQDEALAVNFAFKLYKLADESVTTENPRDELLRRVKGLSPTVTTVVEQDMNANTAPLTARVRETCEYYGALFESLEATVSREN 515 *********************************************************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSa 372 +r+ vE++ lgr+ n vaceg++r+er+e l+kWr+r+++aGF+p+p+++ +a++ + l+ + g++v ++sg +++gW++r+L+++Sa XP_011084446.1 516 PDRVRVEEA-LGRKMGNSVACEGRDRVERCEVLGKWRARMSMAGFQPLPMGQPVAESLRVKLNSGTrgNPGFTVSDQSGGICFGWMGRTLTVASA 609 *********.************************************************9999876556899************************ PP GRAS 373 Wr 374 Wr XP_011084446.1 610 WR 611 *8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.86 | 211 | 589 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-101 | 238 | 611 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 611 aa Download sequence Send to blast |
MSSGFSGGGP DFFAAGGRAT SMNGGYNTNL NPQQQFSLRS LIAGILPDPA AQIRRPQLIG 60 KRSLSEFQQN QQGSGFYLRN VKSRVNYQHA TPISPFSTVE FSPVPSILPE ASSVSNSMIS 120 RYGLPICQPH RLQPLTSSNR NVNNVCLNSG TTLPGLGSEV LRQDSEKKMM NHRLQELEKE 180 LLGEEEDGEA VSVVTNSEWS ETIQDLISPI RKPISPSPTS SSSSCSSTSA SPPIPCSKQS 240 LIDAAVAVSE GKLEVAAGIL TRLQQVANPR GSSEQRVTAH MVSALKSRVN PTEQHRLPVG 300 DLYTKEHALS IQMLYDVSPC FKLGFMAANL AILEATWDQG FNKVHVVDFD IGRGGQYMHL 360 LHALVAKKPA DKRAAAVALK ITTFTDSVPG DEHRLKMVGE GLKALASKIG VCLTFSVKNS 420 TTTDLSRDNL GVDQDEALAV NFAFKLYKLA DESVTTENPR DELLRRVKGL SPTVTTVVEQ 480 DMNANTAPLT ARVRETCEYY GALFESLEAT VSRENPDRVR VEEALGRKMG NSVACEGRDR 540 VERCEVLGKW RARMSMAGFQ PLPMGQPVAE SLRVKLNSGT RGNPGFTVSD QSGGICFGWM 600 GRTLTVASAW R |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-37 | 234 | 611 | 9 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011084446.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084446.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | A0A022PT83 | 0.0 | A0A022PT83_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F01094.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-135 | SCARECROW-like 8 |