PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084446.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 611aa    MW: 66362.2 Da    PI: 8.2582
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3404.1e-1042386112374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L+++A avs+g+le a  +L+rl++ a+p+g++ qR++a+++ AL++r++    +  + lp+ +     ++e++ + +++++vsP++k++++
  XP_011084446.1 238 KQSLIDAAVAVSEGKLEVAAGILTRLQQVANPRGSSEQRVTAHMVSALKSRVNP---TEQHRLPVGDLY---TKEHALSIQMLYDVSPCFKLGFM 326
                     578**************************************************9...444556666665...78999999*************** PP

            GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                     +aN aIlea+  +  ++vH++Dfdi+ G+Q++ Ll+aL +++     + +  l+iT++ ++ +g++++l+ +ge L+ +A+++gv + f+v   +
  XP_011084446.1 327 AANLAILEATWDQgfNKVHVVDFDIGRGGQYMHLLHALVAKKpadkrAAAVALKITTFTDSVPGDEHRLKMVGEGLKALASKIGVCLTFSV-KNS 420
                     **********77767***********************96665765445669********9999**************************9.999 PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                     +++dl+ ++L v+++EalaVn++++l++l desv++e++rde+L+ vk+lsP+v +vveq+++ n++++ +r+ e++eyy alf+slea+++re+
  XP_011084446.1 421 TTTDLSRDNLGVDQDEALAVNFAFKLYKLADESVTTENPRDELLRRVKGLSPTVTTVVEQDMNANTAPLTARVRETCEYYGALFESLEATVSREN 515
                     *********************************************************************************************** PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSa 372
                      +r+ vE++ lgr+  n vaceg++r+er+e l+kWr+r+++aGF+p+p+++ +a++ +  l+     + g++v ++sg +++gW++r+L+++Sa
  XP_011084446.1 516 PDRVRVEEA-LGRKMGNSVACEGRDRVERCEVLGKWRARMSMAGFQPLPMGQPVAESLRVKLNSGTrgNPGFTVSDQSGGICFGWMGRTLTVASA 609
                     *********.************************************************9999876556899************************ PP

            GRAS 373 Wr 374
                     Wr
  XP_011084446.1 610 WR 611
                     *8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.86211589IPR005202Transcription factor GRAS
PfamPF035141.4E-101238611IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MSSGFSGGGP DFFAAGGRAT SMNGGYNTNL NPQQQFSLRS LIAGILPDPA AQIRRPQLIG  60
KRSLSEFQQN QQGSGFYLRN VKSRVNYQHA TPISPFSTVE FSPVPSILPE ASSVSNSMIS  120
RYGLPICQPH RLQPLTSSNR NVNNVCLNSG TTLPGLGSEV LRQDSEKKMM NHRLQELEKE  180
LLGEEEDGEA VSVVTNSEWS ETIQDLISPI RKPISPSPTS SSSSCSSTSA SPPIPCSKQS  240
LIDAAVAVSE GKLEVAAGIL TRLQQVANPR GSSEQRVTAH MVSALKSRVN PTEQHRLPVG  300
DLYTKEHALS IQMLYDVSPC FKLGFMAANL AILEATWDQG FNKVHVVDFD IGRGGQYMHL  360
LHALVAKKPA DKRAAAVALK ITTFTDSVPG DEHRLKMVGE GLKALASKIG VCLTFSVKNS  420
TTTDLSRDNL GVDQDEALAV NFAFKLYKLA DESVTTENPR DELLRRVKGL SPTVTTVVEQ  480
DMNANTAPLT ARVRETCEYY GALFESLEAT VSRENPDRVR VEEALGRKMG NSVACEGRDR  540
VERCEVLGKW RARMSMAGFQ PLPMGQPVAE SLRVKLNSGT RGNPGFTVSD QSGGICFGWM  600
GRTLTVASAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-372346119375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084446.10.0scarecrow-like protein 8
TrEMBLA0A022PT830.0A0A022PT83_ERYGU; Uncharacterized protein
STRINGMigut.F01094.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-135SCARECROW-like 8