PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084346.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 1761aa    MW: 192574 Da    PI: 6.3587
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-09836877346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE e+++d  + +G++ + +Ia+ ++ ++t+ +c+++++k
   XP_011084346.1 836 PWTAEEREIFIDKLAIFGKN-FMKIASFLQ-RKTAADCIEFYYK 877
                      8*****************99.*********.***********98 PP
2Myb_DNA-binding23.99.7e-0810491089345
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                        WT eE  ++++av  + ++ +  I++++  +R+++qck ++ 
   XP_011084346.1 1049 DWTDEEKAIFIQAVSSYAKD-FLMISQCVR-TRSREQCKIFFS 1089
                       5*****************99.*********.********8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-13820881IPR009057Homeodomain-like
PROSITE profilePS5129317.142832883IPR017884SANT domain
SMARTSM007174.6E-9833881IPR001005SANT/Myb domain
PfamPF002496.5E-7835877IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-5835880IPR009057Homeodomain-like
CDDcd001671.22E-7836878No hitNo description
PROSITE profilePS512939.52810451096IPR017884SANT domain
SMARTSM007171.2E-610461094IPR001005SANT/Myb domain
SuperFamilySSF466891.56E-910471096IPR009057Homeodomain-like
PfamPF002491.3E-510491088IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-510491090IPR009057Homeodomain-like
CDDcd001673.81E-610501088No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1761 aa     Download sequence    Send to blast
MPPEQLPWDR RDFRKHERSG SDPRFGGGGF GGGGQNRWRE QHHHPHAPPP HPPPYHHHQN  60
NHQQQQRWYS DFRSSRPIHP GHGKQGGWHM YPDEAGHGFL PFGSRYGERN LEDDNFRPFG  120
SRADGRYLRN SREHRGSLSQ KDWKSPSWEP SASSSGPWRP TTEVTDQKSV ENIQTCDNIN  180
SKTDDSSHPL PNTVSDQSHL QTLVKEKHEK EKHEKNGGTA DGPSSSCQKS VKENGLGSID  240
WKPLKWTRSG SLTSRGSGFS HSSSSKSMGV ESTEVVAEVQ QKNVAPPQSP AAASVLSTAP  300
APQDETSSRK KPRLGWGEGL AKYEKKKVEG PEDGTPKYGL VVNVSNTENM QSPSVNVLDK  360
SPRIGSLSDC ASPATPSSVA CSSSPGVEEK ESIKAARVDH DATNLSCSPS IMSQTQYEGP  420
MFSLENLELT SIANLSSLIN ELLQSDDQSS AETGYVRNTS MNKLLVWKVD ILKALEVTES  480
EIDSLETELK RLTAEPRSCC PCPAASSVLP GECHVKSYEE QVAASSFAVG PTPLKVVSSQ  540
GMIENRSAAP EDEHVMFKDR EIDSPGSATS KLIEVLPSGL DAFPSETAGC VEGFVNMDSN  600
NASTFDQTCL ENGLGPDEKT CHVDAHKPVV ANCQNLSSDD NVHSDGDYIY HSIVASNKDS  660
AERALEELNK SLPTQQCLFN TSIASGVTSF PGGSSVIKEK FLMRKRSLRF KEKVLTLKFK  720
VFQHFWKEGR VVSVRSLRGK SHKKLDPSRT GYKRNRSSSR SRILFSAGGP RTVPAEEVVE  780
FVNGLLSESA FKPCRNSLKM PALILEKEIR MSRFISNNGL VEDPRAAERE RSLINPWTAE  840
EREIFIDKLA IFGKNFMKIA SFLQRKTAAD CIEFYYKNHK SECFERARNK TDFAKQRKSQ  900
SSTYLVGTGK RWNREMNAAS LDILGEASII ADVNNVIESQ RKCASRISFA SSSHKAPRID  960
DGPLQRSNSL DMYSNETVAA DVLAGICGSL SSEAMSSCIT SSVDPADGYQ DWKCQRVTSC  1020
IKRPLTPDVT QNIDDECSDE SCGEMDPTDW TDEEKAIFIQ AVSSYAKDFL MISQCVRTRS  1080
REQCKIFFSK ARKCLGLDQI QPEAGNAGSD DVNGGGSDIE DACVVRTSSV ICDDGSKCKM  1140
EDDLLPPDMK FSCESDIAGT HNLKPDFKIS GDTSVACPLD PKAAEPVVKN LLMVDTQVDD  1200
RPVMDFNVES KENNGACGSA LEIRTSVVLS NIASVRVDEG EDHGLQNGLS DPDNKALVEV  1260
SDGHCWEENG GVGPVSPEDN LDKKKVEGRD ANSSEVTVVN CAASEIKSEP QLAGKVAHPS  1320
FDAHSSVQVE SGCQKEADLE ACSTEKSLGI SVAQNGHLAS VESSILFSVP IKYQRHSGSN  1380
ALSNVDTNRI SKKQSQKIVR IGESQQYISG CSPLGPESSQ ILKGYPVSVQ TVKEINGDVN  1440
SKKHVLLRNI PKQDGKLHSD RHTEFTLQKC SSSRHQSEDV QSVFPSQEQG RDHTRPLSGC  1500
SPDVDKPSRS GDVKLFGTIL ISSQQKRNSC VQERDDNAQH NKAGCQSLNL KFSADQKGIS  1560
DASQSKFGCN DLGSENISAR SFSFWDGNRT QTGFPPLPDS TLLLTKYPAA FSNHSTSAGE  1620
LEQPPFHGVA RSNDCPRNDV SVFPSGDLSS SNGLADYQVL RQELQSFTID MKQSQDAVFS  1680
EMQRRNGFDA VSGVMQQQAR GMVGINVVGR GGVLVGGQCA GVSDPVTAIK MHYAKAQNYN  1740
GQAGNVIRED DKWRSNGDTG R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C4e-15800885994NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D4e-15800885994NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084346.10.0uncharacterized protein LOC105166619
TrEMBLA0A2G9GQ860.0A0A2G9GQ86_9LAMI; Uncharacterized protein
STRINGMigut.F01767.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59042332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-142MYB family protein