PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011084325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GATA | ||||||||
Protein Properties | Length: 333aa MW: 35906.2 Da PI: 5.9855 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.1 | 1e-17 | 248 | 281 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + XP_011084325.1 248 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 281 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.3E-71 | 3 | 332 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.1E-16 | 242 | 292 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.503 | 242 | 278 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.5E-15 | 246 | 279 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 7.13E-15 | 246 | 305 | No hit | No description |
CDD | cd00202 | 3.27E-14 | 247 | 294 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 248 | 273 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.3E-15 | 248 | 281 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MGPNFMDEID CGNFFDQIDD LIEFPPENES GGGGGNLVSS VDSKAFSSMW NDALPESDPF 60 FSGSHGNSSS DLSAELSVPY EDIVQLEWLS TFMEDSFSGQ GMTVGKENLC PEMEPSDNQF 120 QTSSPISVLE SSSSSSTSSS SEAKAMPLSP SHRGPQRARS KRPRPATFNP RAAIQLISPT 180 SSFIETPQPF VAPGLSSESE NFAESTTMKK SPKPAGLEPK KKKKIKIASP VDAEDAHQNP 240 PAQAVRKCMH CEITKTPQWR AGPMGPKTLC NACGVRYKSG RLFPEYRPAA SPTFVPSLHS 300 NSHKKVLEMR GKVGPGTATT TPTTTKPEVI PNM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 164 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011084325.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ073349 | 4e-58 | KJ073349.1 Sesamum indicum clone TilSSR_44550 microsatellite Sesame_44550 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084325.1 | 0.0 | GATA transcription factor 8 isoform X1 | ||||
TrEMBL | A0A2G9GV45 | 1e-152 | A0A2G9GV45_9LAMI; GATA transcription factor | ||||
STRING | XP_009598426.1 | 1e-148 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2345 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 3e-41 | GATA family protein |