PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011084262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 978aa MW: 110059 Da PI: 4.8946 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.8e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_011084262.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_011084262.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.97E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.7E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 7.19E-21 | 33 | 107 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 6.69E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 6.1E-58 | 406 | 654 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 978 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDIRQR KRKRRGIDYN AEIPFEKKPP PGFYDVADED RPTELVKFPT 240 TIEELEGERR VDKEARLRKQ DIARNKIAQR QDAPSAIMQA NKLNDPETVR KRSKLNLPAP 300 QIPDHELEAI AKIGIASDLV GNEELTEGNA ATRALLASYA QTPRQGMTPM RTPQRTPAGK 360 QDAIMMEAEN QRRLTQSQTP LLGGENPMLH PSDFSGVTPK KRDIATPNPL LTPSATPGGT 420 GLTPRIGMTP SRDVYSLGMT PKGTPMRDEL HINEDMDMHE DGKLRQSDSK KELLSGLKNL 480 PQPKNEYQIV IQPFPEDEEE PEEKIEEDMS DRIAREKAEE EARQQALLKK RSKVLQRELP 540 RPPPASLDLI RNSLIRADED KSSFVPPTLV EQADELIRKE LLSLLEHDNV KYPLDEKSTK 600 EKKKGGKRAA NGKSVSVPLI DEFEENELKE ADELIKDEAQ LLRVAMGHEN ESLDGYVEAH 660 KTCLNDMMYF PTRDGYGLSS VANNMEKLAA LQNEFENVKK KMDDETKKAQ RLEQKIKVLT 720 NGYQMRAGKL WTQIEATFKQ MDTAGTELEC FQALQKQEQL SATHRISNLW EEVQKQKELE 780 RILQKRYGDL LPELERLQHL IDAYRLQAER EQELAAKNNS PAPDKTDVAM DQTPAPDLET 840 PKGETAVNND LELSDAAAEP QAESAVESQA ESAAEPQAES AVESHAESAV ESQAESAAEP 900 EPTLDQSVAP NLGNPEPTGI DEGNSMKVDN PDDKRSQELD EAQINPQLIS EHGTDDGAEK 960 EATPVTSETL ESGTAGEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 798 | 3 | 799 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDIRQRKRKRR |
2 | 198 | 204 | QRKRKRR |
3 | 199 | 204 | RKRKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011084262.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084262.1 | 0.0 | cell division cycle 5-like protein isoform X1 | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A022R2T8 | 0.0 | A0A022R2T8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F01544.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6139 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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