PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011084236.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 219aa MW: 24842.7 Da PI: 9.0108 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.4 | 5e-11 | 23 | 69 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 W+ +Ed+++ +a +++ g +W++Ia+ ++ g+++ ++++++ ++l XP_011084236.1 23 WSRQEDKIFEKALVEFPEGidhRWRRIAEFLP-GKSPDEVRLHYETLL 69 ********************************.***********9875 PP | |||||||
2 | Myb_DNA-binding | 42 | 2.1e-13 | 126 | 170 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky XP_011084236.1 126 PWTEDEHRLFLIGLDRYGKGDWRSISRNVVVTRTPTQVASHAQKY 170 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.112 | 15 | 73 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-10 | 19 | 71 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.27E-11 | 22 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-7 | 23 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.61E-10 | 23 | 69 | No hit | No description |
Pfam | PF00249 | 6.2E-10 | 23 | 69 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.826 | 119 | 175 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.93E-16 | 121 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-17 | 122 | 173 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 123 | 169 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-10 | 123 | 173 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.33E-8 | 126 | 171 | No hit | No description |
Pfam | PF00249 | 2.3E-11 | 126 | 170 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MYGIDANSNR WTPPAVDSAA AVWSRQEDKI FEKALVEFPE GIDHRWRRIA EFLPGKSPDE 60 VRLHYETLLH DIAEIDSGRV ELPSYSDESA PLGWDQHARP RTPGQISFGG GNRSRHSEVE 120 RKKGTPWTED EHRLFLIGLD RYGKGDWRSI SRNVVVTRTP TQVASHAQKY FLRHNSGKKE 180 RKRSSIHDIT TAMDSMPVPA PTNLPNQGGS QNCSFAMPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011084236.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084236.1 | 1e-163 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 5e-58 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2G9IA53 | 1e-122 | A0A2G9IA53_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F01593.1.p | 2e-98 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4547 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-74 | MYB family protein |
Publications ? help Back to Top | |||
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