PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084015.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARR-B
Protein Properties Length: 683aa    MW: 75007.3 Da    PI: 6.5551
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.66.8e-29203256155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  XP_011084015.1 203 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQKYRL 256
                     79*******************.********************************8 PP
2Response_reg81.92e-27221301109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll+++l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+++++ + +  G
  XP_011084015.1  22 VLAVDDDPICLKLLETLLRKCQY-HVTTTSQARMALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGVTHG 114
                     799********************.***************888889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l+Kp+ +eel++
  XP_011084015.1 115 ACDYLVKPVRIEELRN 130
                     **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.5E-1641681IPR017053Response regulator B-type, plant
SuperFamilySSF521722.13E-3619150IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.5E-4319154No hitNo description
SMARTSM004482.7E-3220132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.27821136IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2422131IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.18E-2923136No hitNo description
SuperFamilySSF466891.58E-19200260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-30200261IPR009057Homeodomain-like
PROSITE profilePS5129412.018200259IPR017930Myb domain
TIGRFAMsTIGR015571.5E-24203256IPR006447Myb domain, plants
PfamPF002495.0E-6205255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MTVEKIRGDN ENSDNFPVGL RVLAVDDDPI CLKLLETLLR KCQYHVTTTS QARMALKMLR  60
ENKDRFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSA NGDPKLVMKG VTHGACDYLV  120
KPVRIEELRN IWQHVIRRKK FDSRNQNKSA EHVKSHHASR EGHGSATMGN ADQSGKFNRK  180
RKDEEDESED NGNESEDPAT QKKPRVVWSI ELHRKFVAAV NQLGIEKAVP KRILDLMNVE  240
GLTRENVASH LQKYRLYLKR ISSVATQQAN MVAALGVKDS PFMRIGPFEG LGDFRTLAGP  300
GRLANAGLSP YTTGGMLGRL NTPANVNLHN LTPPALLQPT HAQNITAIGE MHPILSPTNQ  360
SPSLFQGMPS SLELDQLQQN KCSTGIVNFN AVDDSRMYTA SNAFTDTGTA IGSSTSIVNG  420
IQGTPVMLHG NSQQTLSGGG FGCHSSHNMT SFSLESLTAG VNGSSNLLDP GSIESCKVQP  480
NSVLSTDPFH SQLPLNGVRE NNFSNGSYLH NNPVDISTTM ALPFEDSREM QCQESLVGNV  540
QNITQTPSQK WCEQGQNYSH SSKTTFGSSD SYIPANGAVS PLSRSMGQDS EIFNQKTGMF  600
INSRSTGGAS NLMQKNENEK LATESRARSN ENFLLEQPKS RGFVPRSYDS LDAMMNAMIK  660
REQDEAIPNC DFGFDDYSFG AAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-25201262364ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084015.10.0two-component response regulator ARR12
TrEMBLA0A2G9GDC80.0A0A2G9GDC8_9LAMI; Two-component response regulator
STRINGXP_009757804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-133response regulator 12