PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083777.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family G2-like
Protein Properties Length: 354aa    MW: 39014.6 Da    PI: 7.2523
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17e-32146199255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_011083777.1 146 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 199
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15143200IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-28144200IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-24146199IPR006447Myb domain, plants
PfamPF002496.1E-7147198IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MYFSSNQMIM ANSTVSTAPD LSLQISPPSV SNCHQYKETT HDYNGLLKMP YGGADRSSTT  60
DSGSSGSDLS HENGFLNAER SFCNQPVEPT LSLGFEMAAG LSLNHTPPLQ MPRHYHHYQP  120
QIYGGREFKR TNSRMMSAIK RSVRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM  180
NVKDLTLAHV KSHLQMYRTV KSTDKGTGQG QTDIGLKLHR TDDENADCNN ISTTPPTMFT  240
PLPPPSSLQT NAPPLQHIAQ SFQSPASRAS WSSSPDNLVP SPSSQQEVLS TDFQAGIDAI  300
QVNGDETAQK MSADKEKLDN LSSLSSPDVL LDLEFTLGRS NWQMDRSKSS LLRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-17147201458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-17147201458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-17147201357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-17147201357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-17147201357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-17147201357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-17147201458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-17147201458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-17147201458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-17147201458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-17147201458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-17147201458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083777.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2834726e-57KP283472.1 Prunus armeniaca aberrant testa shape (ATS) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083778.10.0probable transcription factor KAN4
TrEMBLA0A2G9HEY31e-142A0A2G9HEY3_9LAMI; Uncharacterized protein
STRINGXP_006473404.18e-98(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122621822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-55G2-like family protein