PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083673.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 101aa    MW: 11460.9 Da    PI: 9.8202
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.4e-101558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +++ +a +++ ++   +W+ Iar +g g+++++++ ++
   XP_011083673.1 15 AWTSKQNKQFEEALAMYDKDtpdRWHNIARAVG-GKSAEEVRRHY 58
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.3861166IPR017884SANT domain
SMARTSM007171.5E-81264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-61568IPR009057Homeodomain-like
CDDcd001671.82E-71558No hitNo description
PfamPF002491.6E-71558IPR001005SANT/Myb domain
SuperFamilySSF466896.32E-131669IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MASSSMTSAR GSASAWTSKQ NKQFEEALAM YDKDTPDRWH NIARAVGGKS AEEVRRHYEI  60
LVKDIMQIET DQVPIPNYRA MGSNSRGYGN EQRLLKNLKL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-366101193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.13e-71protein RADIALIS-like 3
SwissprotQ1A1731e-39RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A162A4Z72e-53A0A162A4Z7_DAUCS; Uncharacterized protein
STRINGXP_009771192.12e-51(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-39RAD-like 6