PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011083640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 25136.7 Da PI: 9.7702 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.5 | 2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+EL vLCda+v++i++sst+kl+ey+s XP_011083640.1 9 KKIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMISSTQKLHEYIS 59 68***********************************************86 PP | |||||||
2 | K-box | 89.4 | 6.7e-30 | 71 | 168 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yqk+ ++l+++++e++q++l+kLk+ ++nL+re+R+++Ge+L++L + ++ +L +++++sl+ iR++K++++ +qie+++kk ++++e++++L XP_011083640.1 71 YQKAVAVDLWSSHYEKMQEHLKKLKDVNRNLRREIRQRMGESLNDLGYDQMVNLIEDMDSSLRLIRERKYKVIGNQIETSKKKLRNVEEIHRNLV 165 78889999*************************************************************************************98 PP K-box 96 kkl 98 +l XP_011083640.1 166 LEL 168 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.034 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.26E-38 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.14E-35 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-17 | 82 | 166 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.276 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMISS TQKLHEYISP 60 STTTKQVFDQ YQKAVAVDLW SSHYEKMQEH LKKLKDVNRN LRREIRQRMG ESLNDLGYDQ 120 MVNLIEDMDS SLRLIRERKY KVIGNQIETS KKKLRNVEEI HRNLVLELDA RQEDPHYGLV 180 EHDGDYNSVL GFPHGPPPPG LHGGRAASDL TTFALLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-16 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 8e-16 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 8e-16 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 8e-16 | 1 | 60 | 1 | 60 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011083640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ853384 | 0.0 | HQ853384.1 Sesamum indicum MADS box transcription factor (DEFB2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083640.1 | 1e-162 | floral homeotic protein DEFICIENS-like | ||||
Swissprot | P23706 | 1e-135 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A0A2G9GZM4 | 1e-136 | A0A2G9GZM4_9LAMI; MADS box transcription factor | ||||
TrEMBL | A0A2G9I0W8 | 1e-136 | A0A2G9I0W8_9LAMI; MADS box transcription factor | ||||
STRING | Migut.N03130.1.p | 1e-125 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2314 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-88 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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