PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011083494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 323aa MW: 36395.3 Da PI: 9.9998 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 384.4 | 1.8e-117 | 1 | 323 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 mdd+g+re r+k + ++ +s +q+m+++aerda+i+ernla+sekkaa+aerdma lqrd+a+aern+a++erdn++++l+++e XP_011083494.1 1 MDDSGHREngRHKQPHSqwlmQHqPS-----MKQIMAIMAERDAAIQERNLAISEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQFRE 90 99999987677766444222222233.....45************************************************************** PP GAGA_bind 89 nsla....salpvgvqvlsgtksidslqqlse...pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176 n+++ s +p+g+q+ +g+k+i++ qq+ + +++ + ++++r++++ ++ p++ a+e ++++ k++++ak + +++++k++ks k XP_011083494.1 91 NAMNnsntSPCPPGCQIPHGVKHIHHPQQHAHhhqSHMVEAQYNTRDMHMADTVPTSPVAPEPAKARRAKRTKEAKPA-----TAPTRKPSKSLK 180 *9998888889*****************94444678999**********99999987776666665555533333322.....233333344444 PP GAGA_bind 177 kvkkesader..................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrga 253 kvk+e++d + +k+++k++dl+ln+v++De+t+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yPLP+++++r+a XP_011083494.1 181 KVKREGEDLNktmfekphewtngpdmsrTKQDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHA 275 4444444422245555678899999999******************************************************************* PP GAGA_bind 254 RiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 R++grKmS++af+kl+++LaaeG+dlsnpvDLkdhWAkHGtn+++ti+ XP_011083494.1 276 RVGGRKMSGSAFNKLISRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 323 ***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 5.9E-162 | 1 | 323 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 4.4E-106 | 1 | 323 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MDDSGHRENG RHKQPHSQWL MQHQPSMKQI MAIMAERDAA IQERNLAISE KKAALAERDM 60 AILQRDSAIA ERNNAIMERD NAIATLQFRE NAMNNSNTSP CPPGCQIPHG VKHIHHPQQH 120 AHHHQSHMVE AQYNTRDMHM ADTVPTSPVA PEPAKARRAK RTKEAKPATA PTRKPSKSLK 180 KVKREGEDLN KTMFEKPHEW TNGPDMSRTK QDWKDQDLGL NQVAFDETTM PVPVCSCTGV 240 LRPCYKWGNG GWQSSCCTTN LSMYPLPAVP NKRHARVGGR KMSGSAFNKL ISRLAAEGHD 300 LSNPVDLKDH WAKHGTNRYI TIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011083494.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083484.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_011083486.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_011083487.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_011083489.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_011083490.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_011083491.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_011083494.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_020551029.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_020551030.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_020551031.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_020551032.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_020551033.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_020551034.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Swissprot | Q8L999 | 1e-150 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A2G9GH24 | 0.0 | A0A2G9GH24_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_029314m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-145 | basic pentacysteine 6 |