PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011083361.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

SBP

Protein Properties

Length: 1076aa MW: 119019 Da PI: 7.0609

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011083361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.5	6.2e-41	157	234	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhska ++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_011083361.1 157 VCQVDNCNEDLSTAKDYHRRHKVCEVHSKAGKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 234 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.1E-34	152	219	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.923	155	232	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-37	156	235	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.4E-30	158	231	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	2.0E-5	249	275	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.0E-5	866	992	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.98E-5	867	963	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1076 aa Download sequence Send to blast
MMEEVGAQVV APTVIHQTLS GRFCDSYPMA KKRGLPFHSS TYIHQNASDN WNPKSWDWDS 60 SRFVAKPLQC DEIHAGNGTQ VLPGLPRRNE LQNNAQNPRK PDHAAEDNEN LRLKLGGGDR 120 ARSDGGSGGV NFVEPQPVSR PNKRVRSGSP GGANYPVCQV DNCNEDLSTA KDYHRRHKVC 180 EVHSKAGKAL VGKQMQRFCQ QCSRFHPLSE FDEGKRSCRR RLAGHNRRRR KTQPEDSTTR 240 LLVPGSNDNN IDIVKLLAVL TRAQGNIEDR SGKVAPLPDK DQMIQILSKI SSLPLPADLA 300 ARLKGSIPNL ISSENQNQMN GKASSPATMD LLAILSATPG APSSDAFEIQ SQPSTEGSDS 360 EKTKSLCVDQ TASLNLQRGS MMEFPTVGEK TSTSYDSPME EVDFHVQETS PSLPLQLFTP 420 SPEDYRAVKS PSYRNFLSSG SSNPLEERSP VSSPPVVHNL FPMRTSREAM KDDHLSNSES 480 EIANVKATIS NECSTSLQLF RDSTLATENG SNRSSPYRAG YMSSSGSDHS PSSLNSDARD 540 RNGRIIFKLF DKDPSHLPGS LRSQIYNWLS NSPSEMESYI RPGCLVLSLY LSMPSFVWDH 600 LEENLLNYVN GLVKDIDVDF WGNGRFLVHT DRQMASHKDG KIRLCKSWRA LSTAELISVS 660 PLAVVGGQET SLLLRGRNLT APGTKIHCTH AAEYNIKQVP VASCLDTAYE EISLDCFKVD 720 VAASSVLGRC FIEVENSFRG TSFPVIIADN TICDELRLLE PEINGTEACD GILADHIQST 780 GTPRYREEVL HFLDELGWLF QRKHNSSLFG IPEYRLTRFK FLFIFSVEHD FCAVVKTLLE 840 ILLELNLGRT GLARESLEML SEIHLLNRAV KRRSRSMVDL LIHYSIVDST DTSEKFIFLP 900 NMAGPGGVTP LHLAACTSSS DDMVDALTSD PQEVGLRSWN TALDANGLSP YAYALMRNNH 960 TYNALVARKL ADRNNCQVSV SVTDEVGQFA LEMDKDKRTI SHLNQKQKSC SRCAVVAADG 1020 YKQRFPGSHG LLQRPYIHSM LLVAAVCVCV CVFLRGHPYI GCVGPFAWEN LGYGAS

Sequence ? help Back to Top

Protein Sequence Length: 1076 aa Download sequence Send to blast

MMEEVGAQVV APTVIHQTLS GRFCDSYPMA KKRGLPFHSS TYIHQNASDN WNPKSWDWDS  60
SRFVAKPLQC DEIHAGNGTQ VLPGLPRRNE LQNNAQNPRK PDHAAEDNEN LRLKLGGGDR  120
ARSDGGSGGV NFVEPQPVSR PNKRVRSGSP GGANYPVCQV DNCNEDLSTA KDYHRRHKVC  180
EVHSKAGKAL VGKQMQRFCQ QCSRFHPLSE FDEGKRSCRR RLAGHNRRRR KTQPEDSTTR  240
LLVPGSNDNN IDIVKLLAVL TRAQGNIEDR SGKVAPLPDK DQMIQILSKI SSLPLPADLA  300
ARLKGSIPNL ISSENQNQMN GKASSPATMD LLAILSATPG APSSDAFEIQ SQPSTEGSDS  360
EKTKSLCVDQ TASLNLQRGS MMEFPTVGEK TSTSYDSPME EVDFHVQETS PSLPLQLFTP  420
SPEDYRAVKS PSYRNFLSSG SSNPLEERSP VSSPPVVHNL FPMRTSREAM KDDHLSNSES  480
EIANVKATIS NECSTSLQLF RDSTLATENG SNRSSPYRAG YMSSSGSDHS PSSLNSDARD  540
RNGRIIFKLF DKDPSHLPGS LRSQIYNWLS NSPSEMESYI RPGCLVLSLY LSMPSFVWDH  600
LEENLLNYVN GLVKDIDVDF WGNGRFLVHT DRQMASHKDG KIRLCKSWRA LSTAELISVS  660
PLAVVGGQET SLLLRGRNLT APGTKIHCTH AAEYNIKQVP VASCLDTAYE EISLDCFKVD  720
VAASSVLGRC FIEVENSFRG TSFPVIIADN TICDELRLLE PEINGTEACD GILADHIQST  780
GTPRYREEVL HFLDELGWLF QRKHNSSLFG IPEYRLTRFK FLFIFSVEHD FCAVVKTLLE  840
ILLELNLGRT GLARESLEML SEIHLLNRAV KRRSRSMVDL LIHYSIVDST DTSEKFIFLP  900
NMAGPGGVTP LHLAACTSSS DDMVDALTSD PQEVGLRSWN TALDANGLSP YAYALMRNNH  960
TYNALVARKL ADRNNCQVSV SVTDEVGQFA LEMDKDKRTI SHLNQKQKSC SRCAVVAADG  1020
YKQRFPGSHG LLQRPYIHSM LLVAAVCVCV CVFLRGHPYI GCVGPFAWEN LGYGAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-31	148	231	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	867	872	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011083361.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083361.1	0.0	squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2G9GTF7	0.0	A0A2G9GTF7_9LAMI; Uncharacterized protein
STRING	Migut.C00339.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12887	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]