PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011083338.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | NF-X1 | ||||||||
Protein Properties | Length: 1120aa MW: 121135 Da PI: 8.1279 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 18.8 | 3.6e-06 | 307 | 325 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H C+++CH GpC+pC+ XP_011083338.1 307 CGRHHCERICHVGPCDPCQ 325 ******************6 PP | |||||||
2 | zf-NF-X1 | 18.9 | 3.2e-06 | 525 | 543 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC XP_011083338.1 525 CGQHSCISLCHSGHCPPCL 543 ******************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 8.24E-7 | 129 | 200 | No hit | No description |
PROSITE profile | PS50016 | 8.796 | 137 | 198 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.332 | 140 | 196 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 140 | 195 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 7.75E-6 | 229 | 290 | No hit | No description |
SMART | SM00438 | 0.023 | 252 | 270 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.4 | 254 | 269 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.47E-11 | 297 | 345 | No hit | No description |
Pfam | PF01422 | 1.0E-4 | 307 | 324 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 2.4E-4 | 307 | 326 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.02E-8 | 361 | 404 | No hit | No description |
Pfam | PF01422 | 0.018 | 371 | 388 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.003 | 371 | 390 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 9.83E-13 | 419 | 467 | No hit | No description |
Pfam | PF01422 | 1.4E-4 | 429 | 446 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0022 | 429 | 448 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 18 | 487 | 498 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 130 | 487 | 521 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.87E-8 | 515 | 558 | No hit | No description |
Pfam | PF01422 | 8.7E-5 | 525 | 542 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 4.0E-4 | 525 | 544 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.19E-4 | 572 | 620 | No hit | No description |
SMART | SM00438 | 0.44 | 582 | 600 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.5 | 589 | 599 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.012 | 635 | 650 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.013 | 635 | 665 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 11 | 667 | 693 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.055 | 674 | 695 | IPR000967 | Zinc finger, NF-X1-type |
Gene3D | G3DSA:3.30.70.330 | 6.4E-4 | 920 | 962 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1120 aa Download sequence Send to blast |
MNFSGQNQRR ESNNRRPRSN NSLRNNRCEW VPRGSAPAPA PAPAVAAVVP SASVNGLSQN 60 ESQNGGEPAT RPARPGTPSS NRTHHGSRGN PGRYISQREK GKEEKGKYNH QKNAEVLKSI 120 NIPQLVQEIQ DKLLKGSVEC MICYDMVRRS APIWSCSSCY SIFHLTCIKK WARAPTSTDL 180 LAEKNQGCNW RCPGCQSVQL MSAKEIRYVC FCGKRPDPPS DLYLTPHSCG EPCGKPLERE 240 LPGSGMVKED MCPHVCVLQC HPGPCPPCKA FAPPRRCPCG KEVITTRCSD RKSVLTCGRK 300 CDKLLGCGRH HCERICHVGP CDPCQVLLNA SCFCKKKVEV VLCGDMIVKG EVKGEDGVFS 360 CSLTCEKKLN CGNHVCHETC HPGPCGECEL LPSKIKTCCC GKTSLNEDRR SCLDPIPTCS 420 QICGKILPCG LHRCQDTCHS GVCPPCHVLV NQKCRCGSTS RTAECYKTVT ENEKFTCDKP 480 CGRKKSCGRH RCSERCCPLS NSSTASLVDW DPHLCSMPCE KKLRCGQHSC ISLCHSGHCP 540 PCLETIFTDL TCACGRTSIP PPLPCGTPPP SCQYPCSVSQ PCGHLSSHSC HFGDCPPCSV 600 PVAKECVGGH VVLRNIPCGS KDIRCNKLCG KTRQCGLHAC SRTCHPPPCD SSATSSTSAK 660 ASCRQTCGAP RRDCRHTCTA LCHPSTSCPD VRCEFPVTIT CSCGRVTATV PCDAGGSSGG 720 YTVDTVLEAS ITQKLPVSLQ PAEGNGQRVP LGQRKLMCDD ECAKMERKKV LADAFGINPP 780 NLDALHFGEN ASVSEVLSDL LRRDPKWVLS VEERCKYLVL GRGRGGINAL KVHVFCAMAK 840 DKRDAVRLIA ERWKLSVNAA GWEPKRFVVV HVTPKSKAPA RMLGVKSCNP GNMLQPPVFD 900 PLVDMDPRLV VALFDLPRDA DVSALVLRFG GECELVWLND KNALAVFSDP ARAATAMRRL 960 DQGSVYYGAV SVPQNGGASA MASGAGAWGS AAVSKDVATA AALKGNPWKK VVLQDSGWNE 1020 SSWGAEEWSP NAADTKSRAR TEEEDPIAAS RNRWSVLQPG GTSGSSDVSV KIENLQKQPE 1080 NPSTSGSKVD ESNLNLPVQR EGVEDDVSGD VVDDWENAYD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011083338.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083338.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A2G9FWN9 | 0.0 | A0A2G9FWN9_9LAMI; Transcription factor NF-X1 | ||||
STRING | Migut.D01221.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9313 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |