PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011083223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 310aa MW: 33978.5 Da PI: 10.1243 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 319.6 | 9.8e-98 | 1 | 310 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdaki..........rernlalsekkaavaerd.....maflqrdkalaernkalverd 78 md +g+++ rn+g+ ep ++lk++lglqlmss+ae+ + + + s++ ++++++ +a+ d ++++ + XP_011083223.1 1 MDGNGNMNlRNWGFLEPPtTTLKSHLGLQLMSSMAEKPLFGgggvrdhqhtHPSSVMASTNGGPFHHHRvggisEAHFPMDYWMNQ-------NR 88 999*************9989**************987654477665544444444433444445555558999966669999****.......55 PP GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkek.kakkkkkkse 172 +k+l++l ++ ++++v+++t+s++s+q+ ++ +l ++ + e+e++ ++ + + + kkr +k+pk++ k+kk++ +++ XP_011083223.1 89 DKYLNVLSGNQH-HAYYQSSYGVSPETSSAHSIQMPQQMNLPKNDNVICEMEEVCEERDNGGGGGGSGGAVAKKRGGGKVPKSPpKEKKPRTRTP 182 677777764444.44555789**************888888888888888887766665666666677777888889999999725568888888 PP GAGA_bind 173 kskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkk 267 +++++++s+ +r++++kk ++v+ngvs+D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt +SvyPLP+s+krrgaRiagrKmS gafkk XP_011083223.1 183 RVQRDESAPSV-HRARTPKKRAEIVINGVSMDISEIPIPVCSCTGTPQQCYRWGSGGWQSACCTTGVSVYPLPMSSKRRGARIAGRKMSIGAFKK 276 88888888887.6********************************************************************************** PP GAGA_bind 268 lLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +LekLa+eGy++snp+DL+++WAkHGtnkfvtir XP_011083223.1 277 VLEKLASEGYNFSNPIDLRSYWAKHGTNKFVTIR 310 *********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.2E-131 | 1 | 310 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.2E-99 | 1 | 310 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MDGNGNMNLR NWGFLEPPTT TLKSHLGLQL MSSMAEKPLF GGGGVRDHQH THPSSVMAST 60 NGGPFHHHRV GGISEAHFPM DYWMNQNRDK YLNVLSGNQH HAYYQSSYGV SPETSSAHSI 120 QMPQQMNLPK NDNVICEMEE VCEERDNGGG GGGSGGAVAK KRGGGKVPKS PPKEKKPRTR 180 TPRVQRDESA PSVHRARTPK KRAEIVINGV SMDISEIPIP VCSCTGTPQQ CYRWGSGGWQ 240 SACCTTGVSV YPLPMSSKRR GARIAGRKMS IGAFKKVLEK LASEGYNFSN PIDLRSYWAK 300 HGTNKFVTIR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011083223.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ046947 | 3e-58 | KJ046947.1 Sesamum indicum clone TilSSR_18148 microsatellite Sesame_18148 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083223.1 | 0.0 | protein BASIC PENTACYSTEINE2-like | ||||
TrEMBL | A0A2G9HQ94 | 0.0 | A0A2G9HQ94_9LAMI; Uncharacterized protein | ||||
STRING | XP_009761371.1 | 1e-127 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10048 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 1e-81 | basic pentacysteine 2 |