PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083138.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 299aa    MW: 31414.9 Da    PI: 9.6183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-09103128227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ +     Ck+Gd+C+FaHg+
  XP_011083138.1 103 KTRLCNKYKTAEGCKFGDKCHFAHGE 128
                     8***********************96 PP
2zf-CCCH34.34e-11266290126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC +f + G C +G+rC+FaHg
  XP_011083138.1 266 YKTKLCENFTK-GSCTFGERCHFAHG 290
                     9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.43764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6763765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-63863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.84562No hitNo description
Gene3DG3DSA:4.10.1000.102.8E-14100133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-8100132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094102129IPR000571Zinc finger, CCCH-type
SMARTSM003560.015103128IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6103128IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.13E-15163243IPR004088K Homology domain, type 1
SMARTSM003224.9E-13172242IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.6E-16173241IPR004088K Homology domain, type 1
PROSITE profilePS5008414.487173237IPR004088K Homology domain, type 1
CDDcd001051.10E-14175237No hitNo description
PfamPF000131.1E-11175239IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.5E-17262296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-9264295IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7265291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.943265292IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8266290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEFGGAKKRG RPDGGINGNG GLKKSKQEME SYTTGIGSKL KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGIKA VTQILGSNPA LPAAPRNPVA PPPFPDGPAP VVKTRLCNKY KTAEGCKFGD  120
KCHFAHGEWE LGKPTVPSHE DPRAMGQMPG RYGGGRMDAT PPNLGVAASF GASATAKISI  180
DASLAGAVIG KGGVNSKQIC RLTGAKLSIR DHESDPNLRN IELEGSFDQI KQASQMVREL  240
IVNVSAAAGP AMKNPGMSGL APANNYKTKL CENFTKGSCT FGERCHFAHG AEELRKSGI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083138.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083138.10.0zinc finger CCCH domain-containing protein 44-like
SwissprotQ7F8R01e-117C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2G9HN760.0A0A2G9HN76_9LAMI; Uncharacterized protein
STRINGXP_009803026.11e-161(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-59C3H family protein