PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083064.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 519aa    MW: 55493.3 Da    PI: 5.11
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11330372754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  XP_011083064.1 330 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 372
                     79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.777323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16326388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9329372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-14329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-16330386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.63E-13330376No hitNo description
CDDcd048731.83E-5456508No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MNSMVWIEGS GEEEIASWAK SNNHGGFENN EDMEMGALCT FNSMLEAEDD DWYTTNAAAG  60
GGGAMHGGQH VISFLNESGG NNNQLLLQAV DSSASCSAAS ASVFNNLDPS HHQVSYFLPQ  120
KSLSQTIPNY PFEGTIDLGC ENGILENRGG GILVGGGGGG GLSDLGAQYL LGTLNLCPNN  180
PQFGANSFLQ LPQSSGGSSL LFNKPKILKP LDNFASVGAQ PTLFQKRAAL RRNLGSNLGS  240
LNLVNQMSLK SPSSGAIGEV NEKKRKASSV DDLEDISIDG TNLNYDSEDQ VFENSSANKL  300
EESDKNGGNS SITGGDQKGK KKGPPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS  360
ILGDAIDYLK ELLQKINDLH NELESTPSSS SLTPAASLYP LSPMASGLPA CIKEERSSPR  420
AFVSPLSSPT GQPARVEVRL REGRGVNIHM FCCCSPGILL STMRAIDNLG LDIQQAVISC  480
FNGFAMDIFQ AEQCREGHEL HPDQIKAVLL DSAGFPGMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13325382663Transcription factor MYC2
5gnj_B1e-13325382663Transcription factor MYC2
5gnj_E1e-13325382663Transcription factor MYC2
5gnj_F1e-13325382663Transcription factor MYC2
5gnj_G1e-13325382663Transcription factor MYC2
5gnj_I1e-13325382663Transcription factor MYC2
5gnj_M1e-13325382663Transcription factor MYC2
5gnj_N1e-13325382663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319337KKKGPPAKNLMAERRRRKK
2331338ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083064.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0590344e-56KJ059034.1 Sesamum indicum clone TilSSR_30235 microsatellite Sesame_30235 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083064.10.0transcription factor ICE1
TrEMBLA0A2G9G4590.0A0A2G9G459_9LAMI; Uncharacterized protein
STRINGXP_009769541.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27032452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.45e-84bHLH family protein