PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011083055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | G2-like | ||||||||
Protein Properties | Length: 480aa MW: 52372.9 Da PI: 5.7047 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.1 | 4.8e-34 | 263 | 317 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ XP_011083055.1 263 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 317 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.829 | 260 | 320 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.91E-18 | 261 | 317 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-31 | 262 | 319 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-25 | 263 | 317 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-10 | 265 | 316 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.2E-26 | 348 | 395 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
METKPALSIQ RPGGRQLNNC GASGALSSSL PVHLHPRDER YPDFSDTQQG FLERGVMQHP 60 VPNVAPLSSN SGVVGHIFSS SSGISNDLHF SSSQQQEKHP RQPPFISQSA NSGSSVLVPH 120 SVDSGVLQST ASSHYNKDHN ESWCTDALPD FLDFPVSGAV QNSQLDGSNI GAVAIPSEDP 180 NRPNDWQDWA DQLITDNDAL TDWNELLADT SVAAPDVKLL HQMSRQSTSI SVQPHVSQQL 240 PATPGETCNA AVQSPSTSSA PAKQRMRWTP ELHEAFVEAV NKLGGSERAT PKGVLKLMKV 300 EGLTIYHVKS HLQKYRTARY KPETMEGSSE RKSASIEELS SLDLKTGIEI TEALRLQMEV 360 QKRLHEQLEI QRNLQLRIEE QGRYLQMMFE KQCKSGVDLL KGASSSAEET DAIQNSRARD 420 NSGVEADNSS QGGDPANTAT GSRENSQMME QQQNIPGSEI PGNPNGKVES PPPKRAKLHE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-32 | 262 | 321 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-32 | 262 | 321 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-32 | 262 | 321 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-32 | 262 | 321 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-32 | 262 | 321 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-32 | 262 | 321 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-32 | 262 | 321 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-32 | 262 | 321 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011083055.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083055.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 | ||||
Refseq | XP_011083057.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 | ||||
Refseq | XP_020550432.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | A0A022S254 | 0.0 | A0A022S254_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D00466.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2753 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 6e-98 | phosphate starvation response 1 |