PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083013.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 474aa    MW: 53047.4 Da    PI: 6.4506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.8e-13352398455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  XP_011083013.1 352 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 398
                     799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-4253227IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.33E-18347410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.806348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.98E-14351402No hitNo description
Gene3DG3DSA:4.10.280.108.3E-17352408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10352398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-16354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MGSKFWSNEE EKDMVERVLG SEAAEYFAWS ASNKVLSEFT ASGWDLGVXX XXKIVERSDW  60
TYAIYWHVSK SKSGKSALIW GDGHCREPKK GQEVEGNSSE NEKSMEGDSR KRVLEKVHAC  120
FGGLEDDNVA SKLDRVSDLE MFYLTSMYFV FPFDKPSIPS QSFNSGRCIW VSDMKRCLEC  180
YESRSYLAKS AHLETVVFVP TKSGIVEFGS IKSIPEDRST VQSAKSIVVK LNSKKARAVP  240
KIFGQELSIG GSRSGPISIS FSQKVEDDSV FSAESYELPS TGNTQVYGNS SNRHLNSDSE  300
VKLYPHRNQA AAGGSNSQGI EQAKEDAFLL SDERKPRKRG RKPANGREEP LNHVEAERQR  360
REKLNQRFYA LRAVVPNISK MDKASLLGDA IAYITDLQTK IRMLETEDGN QNQCTTPDIE  420
FHDRQEDAVL RVSCPLDSHP VSGIIKAFRE HQVMAQESTI SITDSGEVVH TFSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-30346426283Transcription factor MYC2
5gnj_B7e-30346426283Transcription factor MYC2
5gnj_E7e-30346426283Transcription factor MYC2
5gnj_F7e-30346426283Transcription factor MYC2
5gnj_G7e-30346426283Transcription factor MYC2
5gnj_I7e-30346426283Transcription factor MYC2
5gnj_M7e-30346426283Transcription factor MYC2
5gnj_N7e-30346426283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333341RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083013.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083013.10.0LOW QUALITY PROTEIN: transcription factor bHLH3-like, partial
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A482JHU70.0A0A482JHU7_SALMI; BHLH3b
STRINGMigut.D00401.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-141bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]