PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011082938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28822.6 Da PI: 9.909 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.2 | 1.6e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ XP_011082938.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 101.5 | 1.1e-33 | 93 | 189 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++s++ea+++ +qqe++kL+++i+++q+++R++lGe+++s++lk+L+++e ++ek++++iRskKnell+++ie +qk+e el+++n+ Lr+k+ XP_011082938.1 93 TNSVSTSEANTQFYQQEANKLRRQIREIQTSNRQILGEGVGSMTLKDLKSMEGKIEKAISRIRSKKNELLFAEIELMQKRELELHNANMFLRAKI 187 4455699***************************************************************************************9 PP K-box 99 ee 100 +e XP_011082938.1 188 AE 189 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.263 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-40 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-33 | 18 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.30E-45 | 18 | 92 | No hit | No description |
PRINTS | PR00404 | 4.7E-33 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.4E-27 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-33 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-33 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.4E-26 | 100 | 187 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.446 | 103 | 193 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MAFPNQESES SNSLRKNGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYANNSVRA SIERYKKASA DSTNSVSTSE ANTQFYQQEA NKLRRQIREI 120 QTSNRQILGE GVGSMTLKDL KSMEGKIEKA ISRIRSKKNE LLFAEIELMQ KRELELHNAN 180 MFLRAKIAEN ERAQQQMNLM PAGSSDDHHQ YQPMTSSHEA AYDLRNFLPM NLMEPNHHYP 240 RHDQTPLQLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-20 | 18 | 89 | 2 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-20 | 18 | 89 | 2 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-20 | 18 | 89 | 2 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-20 | 18 | 89 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-20 | 18 | 89 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-20 | 18 | 89 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-20 | 18 | 89 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-20 | 18 | 89 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-20 | 18 | 89 | 2 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-20 | 18 | 89 | 2 | 73 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011082938.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082936.1 | 0.0 | floral homeotic protein AGAMOUS | ||||
Swissprot | Q93XH4 | 1e-124 | MADS1_VITVI; Agamous-like MADS-box protein MADS1 | ||||
TrEMBL | A0A2G9HUZ9 | 1e-159 | A0A2G9HUZ9_9LAMI; MADS box transcription factor | ||||
STRING | XP_009762632.1 | 1e-135 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-113 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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