PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082906.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 341aa    MW: 38157.4 Da    PI: 7.3208
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1061.9e-33205262259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYY+Cts++C+vkk++ers+edp vv++tYeg+Hnh+
  XP_011082906.1 205 EDGYRWRKYGQKAVKNSPFPRSYYKCTSQKCSVKKRIERSHEDPLVVITTYEGQHNHH 262
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-34189264IPR003657WRKY domain
SuperFamilySSF1182901.2E-28196264IPR003657WRKY domain
PROSITE profilePS5081131.72199264IPR003657WRKY domain
SMARTSM007741.7E-38204263IPR003657WRKY domain
PfamPF031063.5E-26205262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSEPTKDAAA PDHHNMLLSQ GFSSFPTTAT LDHHLINYNH YSPFMMYHDL QNPSTDQFDR  60
THHHNPPDHD LCSLFLQASA DYITTTPSTP FHLSSNNCSS SEVAVCNTSK NCNNSNTEVV  120
ITDIAAENPP TPNSWGSLSS PEAGGVDEDS SSKGKKDLQL KVCEGGDIGK SKKLKAEKTK  180
KKEDKKKQRE ARFAFMTKSE VDNLEDGYRW RKYGQKAVKN SPFPRSYYKC TSQKCSVKKR  240
IERSHEDPLV VITTYEGQHN HHSPATIRGG AAAAFFTPSL FSPPPPPLPP AFPIFPQVDL  300
FSPSTTTQQY SQQQQPQLPD HHHYSLFPDM LSSFLRNPHD P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-28194265778Probable WRKY transcription factor 4
2lex_A3e-28194265778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082906.10.0probable WRKY transcription factor 28
SwissprotQ8VWJ23e-46WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A022QQP61e-66A0A022QQP6_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.M00487.1.p2e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-43WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]