PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011082893.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB_related | ||||||||
Protein Properties | Length: 385aa MW: 43301.4 Da PI: 7.1481 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 6.9e-10 | 327 | 382 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 r+ WT+eE+e l+ +v+++ ++ W++I + +Rt+ ++k++w++ XP_011082893.1 327 RLLWTEEEEETLKAGVQKYSTDgnknlPWTKILDFGQhkfdRTRTPSDLKDKWRNM 382 677*******************************999*****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 6.7E-9 | 4 | 57 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 3.54E-9 | 5 | 58 | IPR011011 | Zinc finger, FYVE/PHD-type |
SMART | SM00249 | 2.4E-5 | 8 | 53 | IPR001965 | Zinc finger, PHD-type |
PROSITE profile | PS51294 | 11.43 | 322 | 385 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.84E-10 | 325 | 383 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-8 | 326 | 385 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-10 | 326 | 384 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-7 | 329 | 382 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.35E-10 | 330 | 383 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MDRSEKHLCI KCNEGGNLLV CSENGCPLAI HEGCMGCPAR FDDAGRFYCP YCLYKQAVAE 60 SRQAREYALA RKKALLIFMD EEMMGSEQHL EEIKRAEADG HDLSKVSPAN ANVTCDDGKS 120 RGKDETILNK SVLDLEHQSS SSEEEKIQEE ESDASTSSKG QEPSLKMYEK EKVRNAEGKK 180 IQEEEPETSA TSTDRDPSLK MHENKNCNPE EEQIQEEECE TSSAPSAEGP SPTVRTRTKR 240 GFKNSDQIDG DSGTVSLQRK LVKQSGKSKL TTPTVNHPRR SSRRLSSALG SAQMLNDKVV 300 ASRSLRQPRQ PLVKLANYTF SSGKRKRLLW TEEEEETLKA GVQKYSTDGN KNLPWTKILD 360 FGQHKFDRTR TPSDLKDKWR NMMAK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 234 | 239 | RTRTKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011082893.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082890.1 | 0.0 | telomeric repeat-binding factor 1-like | ||||
Refseq | XP_011082891.1 | 0.0 | telomeric repeat-binding factor 1-like | ||||
Refseq | XP_011082892.1 | 0.0 | telomeric repeat-binding factor 1-like | ||||
Refseq | XP_011082893.1 | 0.0 | telomeric repeat-binding factor 1-like | ||||
Refseq | XP_020550641.1 | 0.0 | telomeric repeat-binding factor 1-like | ||||
Refseq | XP_020550642.1 | 0.0 | telomeric repeat-binding factor 1-like | ||||
TrEMBL | A0A2G9I788 | 1e-113 | A0A2G9I788_9LAMI; DNA helicase | ||||
STRING | Migut.M00522.1.p | 9e-96 | (Erythranthe guttata) |