PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011082882.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | G2-like | ||||||||
Protein Properties | Length: 342aa MW: 36565 Da PI: 6.4134 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.4 | 2.9e-32 | 72 | 126 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prlrWtpeLHe+Fv+av++LGG++kAtPk+il+lm+v+gLtl+h+kSHLQk+Rl XP_011082882.1 72 RPRLRWTPELHEQFVKAVNELGGANKATPKAILNLMGVEGLTLYHLKSHLQKFRL 126 59****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.067 | 69 | 129 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-16 | 70 | 126 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-29 | 71 | 126 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-23 | 73 | 127 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 74 | 124 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MTTKRKEPDS WWWAGGGGGG GGGEESMFGG VVVENQFHQG GVTAAVGGGY QIQTGKMVES 60 YDTDVYQASY PRPRLRWTPE LHEQFVKAVN ELGGANKATP KAILNLMGVE GLTLYHLKSH 120 LQKFRLGKTA RRLWRREFAP ADYRRRKDER AAAIGLEGQG NSSSSSPFDM NGIKALGSDT 180 YGNLHLVEPH AAKKKQGVAE TISGIKLKQQ AGTSATAAVK LEEGGLAAAR PALLPLFPPI 240 PACGIDYPPE WSEFLEGGWK KPVASRPMDN TSMDDYLNSL GYSSEFALTK SPESGRAGMG 300 FGSFFDDVAS FSKVEDHDIA VDSGAVAVEA GELSAGVGSD FA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-21 | 72 | 128 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-21 | 72 | 128 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-21 | 72 | 128 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-21 | 72 | 128 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-21 | 72 | 128 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-21 | 72 | 128 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-21 | 72 | 128 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-21 | 72 | 128 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-21 | 72 | 128 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-21 | 72 | 128 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-21 | 72 | 128 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-21 | 72 | 128 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011082882.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082882.1 | 0.0 | myb family transcription factor APL-like isoform X2 | ||||
TrEMBL | A0A2G9HGM7 | 1e-112 | A0A2G9HGM7_9LAMI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 1e-27 | G2-like family protein |