PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011082738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | TCP | ||||||||
Protein Properties | Length: 440aa MW: 47867.6 Da PI: 6.6191 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.1 | 7.9e-35 | 37 | 151 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec....eaesssssasn 84 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ s+++a + e +++++++++ XP_011082738.1 37 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAQLppwhptscSAPNA--SfeqeEMQKKVEEEQQ 129 79**************************************************************6655554322222..1222211111111111 PP TCP 85 sssg....................k 89 + + XP_011082738.1 130 ---QqlgihhadlvisnisgpsskR 151 ...1233445555555555554331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-30 | 37 | 140 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.273 | 39 | 97 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MGESSHHNSA SSSRLGLRNS IGGEIVEVQG GHIVRSTGRK DRHSKVCTAK GPRDRRVRLA 60 AHTAIQFYDV QDRLGYDRPS KAVDWLIKKA KAAIDELAQL PPWHPTSCSA PNASFEQEEM 120 QKKVEEEQQQ QLGIHHADLV ISNISGPSSK RAMTMLGGED EQQRLQQSGN VNIPNAQNSS 180 FLPPSLDSDA IADTIKSFFP MGASAEVSSS AMQFQNFPTP DLLSRNSGNS QDLRLSLQSF 240 QDPILLHHQP QQHQNPTQQT EQSHSQAQVL LSGTPLGFDG AAGWPEHHQQ AAELSRFQRL 300 APWNSGGETA SESGGAAAGY LFNSPPAPQP LLQQLLGHNQ FFSQRGPLQS SNTPSIRAWM 360 DPSSIAIATA DHSQQQQQQQ QHHHHPTVVP IYPSSMPGIG FASGVGGFSG FHVPARIQGD 420 EEEHDGYSDK PSSASSDSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-20 | 44 | 97 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 8e-20 | 44 | 97 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011082738.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082737.1 | 0.0 | transcription factor TCP4-like | ||||
Refseq | XP_011082738.1 | 0.0 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 1e-103 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2G9HTM9 | 0.0 | A0A2G9HTM9_9LAMI; Uncharacterized protein | ||||
STRING | XP_009630327.1 | 1e-174 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-83 | TCP family protein |