PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011082685.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GeBP

Protein Properties

Length: 361aa MW: 40552.6 Da PI: 9.4073

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011082685.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	113.2	1.7e-35	150	244	2	96
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqr+wse+Deiv+LqG+id+ +k++++p++d++af++f+kk+++++v +sql +KirrL+ ++++++ k k+gke fsk h+q+++elskkiW XP_011082685.1 150 LFQRVWSEDDEIVILQGMIDYVTKKKSDPVADLNAFHDFIKKNLQADVIRSQLQDKIRRLRLRYENNKGKEKEGKERIFSKRHEQNVYELSKKIW 244 69********************************************************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.9E-31	151	244	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MAKNREPEKP MESGKEEGHQ ATSEDAGSQD SDSAPHLAQV SKKPSSSTLA TPKKAKPQSS 60 SKPQTQPPSS SDEEKSGSES ESDSDEPDPN VKPSSDGARK LKSKAIASDL VTPAKSTAAK 120 RPAEEKETNT KDAKKLKKKA EPETSEKKLL FQRVWSEDDE IVILQGMIDY VTKKKSDPVA 180 DLNAFHDFIK KNLQADVIRS QLQDKIRRLR LRYENNKGKE KEGKERIFSK RHEQNVYELS 240 KKIWWNESGK ENGVEKVMGN GSALRKIPSK RPYTVENEFL EFVNSDLERL LPAKRVNSGG 300 VTVEERILMI GAEYYESGKG LEEEKEWKKL NVEEMEVYLR QLEVKTARAK LVLDAVKSGG 360 H

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MAKNREPEKP MESGKEEGHQ ATSEDAGSQD SDSAPHLAQV SKKPSSSTLA TPKKAKPQSS  60
SKPQTQPPSS SDEEKSGSES ESDSDEPDPN VKPSSDGARK LKSKAIASDL VTPAKSTAAK  120
RPAEEKETNT KDAKKLKKKA EPETSEKKLL FQRVWSEDDE IVILQGMIDY VTKKKSDPVA  180
DLNAFHDFIK KNLQADVIRS QLQDKIRRLR LRYENNKGKE KEGKERIFSK RHEQNVYELS  240
KKIWWNESGK ENGVEKVMGN GSALRKIPSK RPYTVENEFL EFVNSDLERL LPAKRVNSGG  300
VTVEERILMI GAEYYESGKG LEEEKEWKKL NVEEMEVYLR QLEVKTARAK LVLDAVKSGG  360
H

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011082685.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082685.1	0.0	probable transcription factor At4g00390
TrEMBL	A0A2Z7D2M7	2e-83	A0A2Z7D2M7_9LAMI; Mediator-associated protein 1
STRING	Migut.M01263.1.p	4e-88	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3042	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	6e-24	DNA-binding storekeeper protein-related transcriptional regulator