PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082624.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARR-B
Protein Properties Length: 538aa    MW: 60883.7 Da    PI: 6.3282
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.87.4e-26195248155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W pe+H++Fv av++L G++kA+Pk+ilelm+ + Lt+e+v+SHLQkYRl
  XP_011082624.1 195 KRRVVWLPEIHHKFVAAVNKL-GIDKAVPKKILELMNNENLTRENVASHLQKYRL 248
                     689******************.********************************8 PP
2Response_reg78.52.4e-26171241108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l vdD+p+ ++ll+++l+k +y +v+++ ++  al+ll+e++  +Dl++ D++mp+mdG++ll++ r e  ++p++++++++++e++ + +  G
  XP_011082624.1  17 ILAVDDNPTCLMLLESLLRKCQY-HVTTTNQAITALNLLRESKdkFDLVISDVDMPDMDGITLLEHVRLEM-DIPVVMLSSYDDKELVMKGIIHG 109
                     799********************.***************988889**********************9976.*********************** PP

                     ESEEEESS--HHHHH CS
    Response_reg  94 akdflsKpfdpeelv 108
                     a d+l Kp+ ++el 
  XP_011082624.1 110 ACDYLLKPVRIQELK 124
                     ***********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.0E-1341533IPR017053Response regulator B-type, plant
SuperFamilySSF521727.83E-3713139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.9E-4114160No hitNo description
SMARTSM004488.2E-3315127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.0316131IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-2317124IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.55E-2818130No hitNo description
PROSITE profilePS5129411.2192251IPR017930Myb domain
SuperFamilySSF466897.7E-18192252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-27193252IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-23195248IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MTMHPKIGDD FPTGMRILAV DDNPTCLMLL ESLLRKCQYH VTTTNQAITA LNLLRESKDK  60
FDLVISDVDM PDMDGITLLE HVRLEMDIPV VMLSSYDDKE LVMKGIIHGA CDYLLKPVRI  120
QELKIIWQHV VRRKKLDFKA WRTSDNAHLK SGELQEEFKV TKNVDQNVKS NKRRKHQAND  180
EEKGQGCEDL PTKKKRRVVW LPEIHHKFVA AVNKLGIDKA VPKKILELMN NENLTRENVA  240
SHLQKYRLYL KKSFGCADSA YGQNFNEVIT ENISTRQSMD SGYRSYPATR VPSTLNTPPG  300
PSLGDLSSSG IIQWGEGDSL MNTNYHQPNT HTSMQTGNQD LKMLHELNIS GARNCGFHNN  360
TLMLEEHFFN APREEEVFGN QSSTEIPSSL TSDFSSMLPN FGRSSDNWSA AVHSPSVFHE  420
PAPSICLSIH TSAHAVINPH EVSPISSLVN ASPNVKMYLD CPKYPASQDA GDNMNHDPVL  480
DRNILHQEFS DQFNYTFCLG DPLLVPREVD MCQRHECRTN DEVSNSVRES YFDDSLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-20193252362ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192196KKKRR
2192197KKKRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082624.20.0two-component response regulator ORR24-like
TrEMBLB9RNX81e-113B9RNX8_RICCO; Two-component response regulator
STRINGXP_002515447.11e-114(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-94response regulator 12