PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082584.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 326aa    MW: 37908.7 Da    PI: 5.3712
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.98.9e-35121032102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d ++ +++sws+ g+sfvv+d++ ++++vLp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++sF +g+k+ll++
  XP_011082584.1  12 FLMKTFDMVDDLTTAQIVSWSRGGHSFVVWDPHALSTSVLPRYFKHNNFSSFVRQLNTYGFRKIDADK---------WEFTNESFIRGQKHLLRN 97 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_011082584.1  98 IRRRKA 103
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-378101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.49E-338101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-578101IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3112101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEGLHEVGPP PFLMKTFDMV DDLTTAQIVS WSRGGHSFVV WDPHALSTSV LPRYFKHNNF  60
SSFVRQLNTY GFRKIDADKW EFTNESFIRG QKHLLRNIRR RKAPSQPLPH QQAIAGPCLE  120
LGRFGQDSEV ERLRRDKQVM LMELVKLRQQ QQSTRAYIQQ MELRLQGTEK KQQQMMRFLA  180
RAMQNPDLIH QLVQQKQKNK ELEEAMTKKR RRPIEAGESS RIKVEPLEFG GLYGPQVSEL  240
EALALEMQGF GRAKQEPEEE SEDDEVEQLE SYHDKELDQG FWEELLNEGF DEREGVSKND  300
EEGEEEDVNV LADRFGFLGS SPKKLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-231010127129Heat shock factor protein 1
5d5v_B9e-231010127129Heat shock factor protein 1
5d5v_D9e-231010127129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082584.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082584.20.0heat stress transcription factor A-7a-like
SwissprotQ9LUH81e-113HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A068U6A91e-165A0A068U6A9_COFCA; Uncharacterized protein
STRINGEOX946441e-158(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-107heat shock transcription factor A6B