PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082427.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 371aa    MW: 41484.9 Da    PI: 4.7256
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082427.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEde+l ++v+  G g+W++ ++  g+ R++k+c++rw +yl
   XP_011082427.1 14 RGRWTAEEDEILRKYVEANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding51.91.8e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E+e+++++++ lG++ W++Ia +++ gRt++++k++w+++l
   XP_011082427.1  67 RGNISAQEEEIIINLHASLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-22564IPR009057Homeodomain-like
PROSITE profilePS5129418.071961IPR017930Myb domain
SuperFamilySSF466892.68E-2811108IPR009057Homeodomain-like
SMARTSM007176.4E-131363IPR001005SANT/Myb domain
PfamPF002493.7E-151461IPR001005SANT/Myb domain
CDDcd001678.86E-91661No hitNo description
PROSITE profilePS5129425.2862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2565116IPR009057Homeodomain-like
SMARTSM007171.4E-1566114IPR001005SANT/Myb domain
PfamPF002492.6E-1467112IPR001005SANT/Myb domain
CDDcd001671.39E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDEILRKYVE ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI SAQEEEIIIN LHASLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKIQSFR  120
PTKFIPPAVA AAVRRTGRRT ARSVAKKNKN SELKGGGGAA NTPVPMPTTP TPEKEALSST  180
AEWQDKDNSC NVIPESSPLE ERLMESLGAA GTEESEIRNT TPVFSVTEEM EMENGDLCLD  240
DIMEDLNGIV GLDEERESPG KIEERESESC RNVDSGEKGS SGNGNHVVDD RGSWKSIGEW  300
NLMSSPGNSW EWDWCHDDDT LRGGNEEWGQ EENTLSWLWD GDTATGDCTD GDSEMDRRRE  360
KHNAMLSWLM S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21121185110B-MYB
1gv2_A1e-21121162105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-21121414159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-21121414159MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-211211625128MYB TRANSFORMING PROTEIN
1mse_C1e-21121162105C-Myb DNA-Binding Domain
1msf_C1e-21121162105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082427.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082427.10.0myb-related protein Myb4
TrEMBLA0A2G9GH611e-100A0A2G9GH61_9LAMI; Transcription factor, Myb superfamily
STRINGEOX952263e-89(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-71myb domain protein 111