PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082375.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 329aa    MW: 36988 Da    PI: 9.304
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.3e-09269311343
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                       W++ Ed+ l++a k ++++   +W++Ia+ ++ g+t   c  r
   XP_011082375.1 269 TWSPAEDLALLNALKAFPKDvamRWEKIAASVP-GKTKSACMKR 311
                      7********************************.*****9*987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.668163204IPR017877Myb-like domain
SMARTSM007173.3E-5167220IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-5169212IPR009057Homeodomain-like
CDDcd001670.00211170217No hitNo description
Gene3DG3DSA:1.10.10.602.3E-8261317IPR009057Homeodomain-like
PROSITE profilePS5129410.458262320IPR017930Myb domain
SMARTSM007172.3E-8266318IPR001005SANT/Myb domain
SuperFamilySSF466897.49E-10266315IPR009057Homeodomain-like
PfamPF002494.8E-8269311IPR001005SANT/Myb domain
CDDcd001673.12E-8269316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEFLDEFESR PRFLFQSKHS PQPSDPEHSS SSFFSSLHKP TLFISLSFSL LIFSLALFYF  60
NFEPLKSLLL WLSFSLLLGP FAPPSLTAGD IRVGLGPPLK ESPNISIEGT EKFNRKSTKI  120
RKKPSEDAIR SDGVLERSTT TDGPLVDLAD NESNRFNESF TENKSVEQSE WSEVDEDLLR  180
KLMGKHPVGK PGRWEAIAEG FKGKHKVEAV IRKAKEMGER KVSDQDSYSK FLKDRKPVDR  240
RLVDKGGNEA NAEIGIENQN VEEGRKESTW SPAEDLALLN ALKAFPKDVA MRWEKIAASV  300
PGKTKSACMK RMTELKKDFR SSKASGQIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082375.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_011082376.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A2G9HPA21e-150A0A2G9HPA2_9LAMI; Uncharacterized protein
STRINGMigut.A01004.1.p1e-118(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126681011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-67MYB_related family protein