PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011082230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 31872.7 Da PI: 8.064 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.3 | 2e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l + + +G+g +W + +++ g+ R++k+c++rw++yl XP_011082230.1 14 RGSWSPEEDATLRTYLHNHGTGgNWIALPHKAGLQRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T++E+ + ++ ++ G++ W+ Ia++++ gRt++++k++w++ XP_011082230.1 69 GAFTQDEENVICNLYRKIGSR-WSVIASHLP-GRTDNDVKNYWNT 111 89*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.716 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-25 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.386 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 7.3E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.21E-10 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGRSPCCDKS KVKRGSWSPE EDATLRTYLH NHGTGGNWIA LPHKAGLQRC GKSCRLRWLN 60 YLRPDIKHGA FTQDEENVIC NLYRKIGSRW SVIASHLPGR TDNDVKNYWN TKLKKKLMPA 120 DCNTPRMKTN VKTATIATSG TITTTTIPDK ATTFHASTTS LAFSPTFPTP FLADNTTAGL 180 VNANAKITVP YEPISFSFSR FILEGSSNCS SADNSNYFSP SHQDSSPFMP FASAMDENYG 240 VNGIPRDEYS YEVLSSIWPQ EEALGADGNA DLFSIFHIDS NPPGVSQSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-22 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011082230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082230.1 | 0.0 | transcription factor MYB6 | ||||
TrEMBL | A0A2G9HH54 | 1e-107 | A0A2G9HH54_9LAMI; Transcription factor, Myb superfamily |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 5e-69 | myb domain protein 84 |