PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 289aa    MW: 31872.7 Da    PI: 8.064
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l  + + +G+g +W + +++ g+ R++k+c++rw++yl
   XP_011082230.1 14 RGSWSPEEDATLRTYLHNHGTGgNWIALPHKAGLQRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

2Myb_DNA-binding44.73e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T++E+  + ++ ++ G++ W+ Ia++++ gRt++++k++w++
   XP_011082230.1  69 GAFTQDEENVICNLYRKIGSR-WSVIASHLP-GRTDNDVKNYWNT 111
                      89*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.716962IPR017930Myb domain
SuperFamilySSF466891.22E-2512109IPR009057Homeodomain-like
SMARTSM007173.3E-91364IPR001005SANT/Myb domain
PfamPF002497.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221569IPR009057Homeodomain-like
CDDcd001671.31E-71662No hitNo description
PROSITE profilePS5129422.38663117IPR017930Myb domain
SMARTSM007177.3E-1367115IPR001005SANT/Myb domain
PfamPF002499.9E-1369111IPR001005SANT/Myb domain
CDDcd001677.21E-1070113No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRSPCCDKS KVKRGSWSPE EDATLRTYLH NHGTGGNWIA LPHKAGLQRC GKSCRLRWLN  60
YLRPDIKHGA FTQDEENVIC NLYRKIGSRW SVIASHLPGR TDNDVKNYWN TKLKKKLMPA  120
DCNTPRMKTN VKTATIATSG TITTTTIPDK ATTFHASTTS LAFSPTFPTP FLADNTTAGL  180
VNANAKITVP YEPISFSFSR FILEGSSNCS SADNSNYFSP SHQDSSPFMP FASAMDENYG  240
VNGIPRDEYS YEVLSSIWPQ EEALGADGNA DLFSIFHIDS NPPGVSQSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-22141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082230.10.0transcription factor MYB6
TrEMBLA0A2G9HH541e-107A0A2G9HH54_9LAMI; Transcription factor, Myb superfamily
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-69myb domain protein 84