PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082199.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARR-B
Protein Properties Length: 429aa    MW: 48135.6 Da    PI: 6.9856
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082199.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.32.3e-25181234155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W p++H++Fv av++L G++kA+Pk+ilelm+ + Lt+e+v+SHLQkYRl
  XP_011082199.1 181 KRRVVWLPDIHHKFVAAVNKL-GIDKAVPKKILELMNDERLTRENVASHLQKYRL 234
                     689******************.********************************8 PP
2Response_reg77.35.3e-2631101108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll+++l+k +y +v+++ ++  al+ll+e++  +Dl++ D++mp+mdG++ll++   e  ++p+i++++++++e++ + +  G
  XP_011082199.1   3 VLAVDDNPTCLMLLESLLRKCQY-HVTTTNQAITALNLLRESKdkFDLVISDVDMPDMDGITLLEHVGLEM-DIPVILLSSYDDKELVMKGITHG 95 
                     799********************.***************988889**********************6644.8********************** PP

                     ESEEEESS--HHHHH CS
    Response_reg  94 akdflsKpfdpeelv 108
                     a d+l Kp+ ++el 
  XP_011082199.1  96 ACDYLLKPVRIQELK 110
                     ***********9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.1E-401145No hitNo description
SuperFamilySSF521722.85E-351125IPR011006CheY-like superfamily
SMARTSM004482.2E-311113IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363921.7E-1301423IPR017053Response regulator B-type, plant
PROSITE profilePS5011042.5412117IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-233110IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.80E-284116No hitNo description
PROSITE profilePS5129410.076178237IPR017930Myb domain
SuperFamilySSF466899.5E-17178238IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-27179238IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-23181234IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MRVLAVDDNP TCLMLLESLL RKCQYHVTTT NQAITALNLL RESKDKFDLV ISDVDMPDMD  60
GITLLEHVGL EMDIPVILLS SYDDKELVMK GITHGACDYL LKPVRIQELK VIWQHVVRRK  120
KLDFKAWRTS DNAHLKSGEL QEEFKVTKNV DHNVKSNKRR KDQTNDKEKG QGCEDLPTKK  180
KRRVVWLPDI HHKFVAAVNK LGIDKAVPKK ILELMNDERL TRENVASHLQ KYRLYLKKSF  240
GCADSAYGQI FNEVITENIG TGQSMDSGYR SYPATRVPST LNTPPGPSSA DLSSSGIIQW  300
GEADSLMNTN CHQPNTHAST QTGNQDLKML HELNISGARN CGFPNNTLML EEHFFNAPRE  360
EEVFGNQSST EISSSLTSDF SSMLPNFGSS SDNWSAAVHS PSVFHEPAPS IYLSIHTSAH  420
ALVRMQGIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19178238262ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178182KKKRR
2178183KKKRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082199.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082624.20.0two-component response regulator ORR24-like
TrEMBLA0A2R6PJ171e-116A0A2R6PJ17_ACTCH; Two-component response regulator
STRINGXP_002515447.11e-116(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.17e-97response regulator 12