PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081822.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 1013aa    MW: 112033 Da    PI: 5.0761
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-183783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l  av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
   XP_011081822.1 37 KGQWTPEEDEILRMAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP
2Myb_DNA-binding65.97.5e-2189135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l
   XP_011081822.1  89 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                      79******************************.*************97 PP
3Myb_DNA-binding48.22.4e-15141183145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
   XP_011081822.1 141 KEAWTQEEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 183
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1413283IPR017930Myb domain
SMARTSM007173.8E-153685IPR001005SANT/Myb domain
PfamPF002497.3E-163783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-233895IPR009057Homeodomain-like
SuperFamilySSF466893.38E-163893IPR009057Homeodomain-like
CDDcd001671.10E-134083No hitNo description
PROSITE profilePS5129434.26984139IPR017930Myb domain
SuperFamilySSF466894.67E-3286182IPR009057Homeodomain-like
SMARTSM007176.5E-2088137IPR001005SANT/Myb domain
PfamPF002492.7E-1989135IPR001005SANT/Myb domain
CDDcd001671.85E-1791135No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2796142IPR009057Homeodomain-like
SMARTSM007176.3E-15140188IPR001005SANT/Myb domain
PROSITE profilePS5129419.513140190IPR017930Myb domain
PfamPF002492.0E-13141184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-22143190IPR009057Homeodomain-like
CDDcd001671.16E-11143183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
MESDRTSNAL SDGTRDGLQR ARPLHGRTSG PTRRSTKGQW TPEEDEILRM AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPDLVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPGIN KEAWTQEEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DMYLASGLLS QFQGPILLSH PNNSAASSSS KAQQSGEDDR DGAEVEEASE  240
CSISQSTNNA INRTEHPSGD YRVTEESSAI PSSEDYRPAF QEVMYAIPAV PCEPGNKFLE  300
HDFSIDWGSF AGKEWQANTN ELPDMSLLDL GQESSMFIPS LTGRDNNEPF STETYMEGAS  360
IPMVNMVVGS DTPNPIANSD CNEGYPEVDH DGCPSENFIS NSNGPPDTLL RNYSNYQLPY  420
VQSAMLGTSF TEPLPLRTQL PPDVDPLMFG INPDQCNDSS NVNVEQESIS PSMHDRFISA  480
KESDCSPSAD GSNEAKRSPK RVPANDFVLA PLNDSQCCSS KEKDPAESDE LKDSGALFYE  540
PPRFPSLDIP FFSCDLIQSG TDMHQEYSPL GIRQLMISSM TPFKLWDSPS RDGSPESVLK  600
SAAKSFTGTP SILKKRHRDL VSPLSEKRGE KKLECISKQE TFSNMINNDL SELEVMFNEC  660
IDQKGAMPSL SPKSKGKCEA LCMDKENVGP ACGQGKHESN ECILTSENII SQKEFNISEC  720
SDKIPEHTAV AEVKAKGMRK NAMDSAKEFS GILVEHDMNH LLFFSPDRFG IKGDRSIGLS  780
ARALGNQYAR KIDAVSEHGA SLSSAETSCL SVLCSPRLSA KKDGTNLIIT TSLQSLSPSE  840
KKAESSSKGV AFENNSIFME TPFKRSIESP SAWKSPWFIN SFVPGPRVDT DITIEDIGYF  900
MSPGERSYDA IGLMKQLGEQ TAGAFADAQK VLGDETPETL VKAKCSTNQE LEKENNHGPN  960
TQTEHHSILA SNFMAERRAL DFSECGTPAK ETGKFASSIG ISSPSSYLLK SCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-68371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-68371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7801020.0KR780102.1 Rehmannia glutinosa 3R MYB protein (MYB26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081822.10.0transcription factor MYB3R-1
RefseqXP_011081823.10.0transcription factor MYB3R-1
RefseqXP_020550835.10.0transcription factor MYB3R-1
TrEMBLA0A0K1SB810.0A0A0K1SB81_REHGL; 3R MYB protein
STRINGMigut.A00232.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-117Homeodomain-like protein