PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011081563.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 23820.9 Da PI: 8.8378 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.3 | 1.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W++++r g+ R++k+c++rw +yl XP_011081563.1 14 RGLWSPEEDEKLINYITTYGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.4e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++ E l+++++++lG++ W+ Ia++++ gRt++++k++w+ XP_011081563.1 67 RGSFSHNEANLIIELHRLLGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.166 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.0E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.72E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.404 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.11E-10 | 74 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PRLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SHNEANLIIE LHRLLGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLVSSH 120 HHHHHHQNLQ TDHHLTAAST LISPNLANSS GSSSESLYLL SSDNNSLIIP NPQMDQICIP 180 TPQITALQGF DPIESRVLDD QVMSNFHANS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-31 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011081563.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ062364 | 6e-62 | KJ062364.1 Sesamum indicum clone TilSSR_33565 microsatellite Sesame_33565 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081563.1 | 1e-156 | transcription factor MYB26-like, partial | ||||
Swissprot | Q9SPG3 | 4e-73 | MYB26_ARATH; Transcription factor MYB26 | ||||
TrEMBL | A0A2G9HT15 | 8e-88 | A0A2G9HT15_9LAMI; Transcription factor, Myb superfamily | ||||
TrEMBL | A0A2G9HXP0 | 2e-87 | A0A2G9HXP0_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | XP_008228386.1 | 1e-83 | (Prunus mume) | ||||
STRING | VIT_09s0002g01670.t01 | 6e-84 | (Vitis vinifera) | ||||
STRING | EMJ17341 | 1e-83 | (Prunus persica) | ||||
STRING | XP_010087725.1 | 3e-83 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 1e-78 | myb domain protein 26 |
Publications ? help Back to Top | |||
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