PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011081339.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 593aa MW: 66595 Da PI: 4.9715 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.8 | 5.1e-54 | 6 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp+GfrF+Ptdeelv++yL+ k++g++ ++ +vi+e+d++k+ePwdLp+ +k++++ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++ XP_011081339.1 6 LPKGFRFRPTDEELVSHYLRLKINGHHSSV-QVIPEIDVCKWEPWDLPAlsVIKSDDQEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKDRTIK 99 799************************999.99***************4458889999************************************* PP NAM 94 sk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++l+g+kktLvfykgrapkge+t+W+mheyr+ XP_011081339.1 100 SRkslpsgrsNTQLIGMKKTLVFYKGRAPKGERTNWIMHEYRA 142 *9888888777777***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-62 | 4 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.063 | 6 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-28 | 7 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 593 aa Download sequence Send to blast |
MKLEALPKGF RFRPTDEELV SHYLRLKING HHSSVQVIPE IDVCKWEPWD LPALSVIKSD 60 DQEWFFFCPR DRKYPNGHRS NRATEAGYWK ATGKDRTIKS RKSLPSGRSN TQLIGMKKTL 120 VFYKGRAPKG ERTNWIMHEY RATEPDLDGS SPGQGDYVLC RLFHKADEKL DHSKYDEVEP 180 TGSSPSTSKS SPDEASSSDL FTEPAGLGIE IFKEPEDVKM KWKDEADTTP AILTPKEIRE 240 SNIADHSGEK TDREVREEDV YAPIREIPLS DEAAYNQFDD KALDPLLSLN YTDSGACIGS 300 PFPDDFGNDP NGLHFQDGTS EQDVSLSELL EGLQNHGSCF HEQLTSDKTL AASEGLIPEQ 360 INALEHTPIT LCKADLCKMY GETDTEMVQA QGQPSPQFQV ASSADHLVSH YAIRKDVSSL 420 DVVSGSLDDS FYHSYQTKDG NTHVSGTGIK IRSRQPRNQP TILNSTTQGT TSRRIRLLME 480 SGSNPICYEE SKDASSSEEQ ESQSLITKDD EDTTKTWESQ HPEDRVEDEN KGITQKRVDE 540 NGITKMASML STTSTVLRRV ASYLKTYAVR IYFVIILLVV SIGLWKCPSF HEF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 9e-50 | 5 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-50 | 5 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-50 | 5 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-50 | 5 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-50 | 5 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-50 | 5 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-50 | 5 | 165 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-50 | 5 | 165 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011081339.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081339.1 | 0.0 | protein NTM1-like 9 isoform X1 | ||||
TrEMBL | A0A2G9G544 | 0.0 | A0A2G9G544_9LAMI; Uncharacterized protein | ||||
STRING | Migut.A01059.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14316 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-110 | NAC transcription factor-like 9 |