PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011081306.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25774.7 Da PI: 6.5988 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6.1e-19 | 65 | 114 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++aa+ +++g XP_011081306.1 65 TFRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDAAAIAIKG 114 59****887.**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.42E-21 | 65 | 123 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.7E-37 | 65 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 65 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.09 | 65 | 122 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.5E-13 | 66 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.78E-20 | 66 | 124 | No hit | No description |
PRINTS | PR00367 | 2.0E-10 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDQQFTIFDC MHDESTAAAT ITTTTTSSPY FFSRAEPSTT DHNKMKRINK ISTRINHGER 60 NDHPTFRGVR RRSWGKWVSE IREPRKKSRI WLGTFATAEM AARAHDAAAI AIKGRSAFLN 120 FPELAQQLPR PASNSPKDVQ AAATKAAELM VSAAEHGSDR NAHMSPISST CSADNDNIDD 180 AFLGLPDLFL GISGHYQLDG WFCTAAAGAP LLQVAGGEAF HGEFSPEDFV PWDCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 62 | 122 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011081306.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ051926 | 2e-56 | KJ051926.1 Sesamum indicum clone TilSSR_23127 microsatellite Sesame_23127 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081306.2 | 1e-176 | ethylene-responsive transcription factor ERF039-like | ||||
TrEMBL | A0A103XRF2 | 2e-52 | A0A103XRF2_CYNCS; AP2/ERF domain-containing protein | ||||
STRING | cassava4.1_026245m | 9e-49 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 7e-35 | ERF family protein |