PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081162.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24276 Da    PI: 9.7616
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081162.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF946.8e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++g+lye+ss
  XP_011081162.1  9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPKGRLYEFSS 59
                    79***********************************************96 PP

2K-box78.81.3e-2683173999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + e+++++l+ e a L+k ie L+ ++R+llGe+L+s+s++eL+q+eq Le+sl++iR++Kn l++eqi++l+++ek+l +en++Lrkk+e
  XP_011081162.1  83 TMEENTQHLKDETAELRKTIELLEDSKRRLLGESLDSCSVEELEQVEQLLERSLNNIRARKNTLFHEQIDQLKEQEKKLMQENTRLRKKFE 173
                     67899************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.707161IPR002100Transcription factor, MADS-box
CDDcd002651.53E-40371No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-30323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-31374IPR002100Transcription factor, MADS-box
PfamPF003191.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2583172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.44288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVRGKTEMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP KGRLYEFSSS  60
SVINKTIERY LANVKNLAIG RKTMEENTQH LKDETAELRK TIELLEDSKR RLLGESLDSC  120
SVEELEQVEQ LLERSLNNIR ARKNTLFHEQ IDQLKEQEKK LMQENTRLRK KFEMLPLQLS  180
VNLPTVRPPA QAMEVETALF IGPPSTTTNG GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-17162162Myocyte-specific enhancer factor 2B
1tqe_Q6e-17162162Myocyte-specific enhancer factor 2B
1tqe_R6e-17162162Myocyte-specific enhancer factor 2B
1tqe_S6e-17162162Myocyte-specific enhancer factor 2B
3mu6_A6e-17372270Myocyte-specific enhancer factor 2A
3mu6_B6e-17372270Myocyte-specific enhancer factor 2A
3mu6_C6e-17372270Myocyte-specific enhancer factor 2A
3mu6_D6e-17372270Myocyte-specific enhancer factor 2A
6c9l_A6e-17162162Myocyte-specific enhancer factor 2B
6c9l_B6e-17162162Myocyte-specific enhancer factor 2B
6c9l_C6e-17162162Myocyte-specific enhancer factor 2B
6c9l_D6e-17162162Myocyte-specific enhancer factor 2B
6c9l_E6e-17162162Myocyte-specific enhancer factor 2B
6c9l_F6e-17162162Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081162.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081162.11e-153MADS-box protein SOC1
SwissprotO827433e-72AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA9YTS51e-96A9YTS5_9LAMI; SOC1-like protein 2
STRINGMigut.A00897.1.p5e-92(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.15e-68AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]