PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081009.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 311aa    MW: 34270.3 Da    PI: 6.3169
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081009.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.31.8e-36281192102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  XP_011081009.1  28 FLTKTYQLVDDPSIDDFISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKSLLRD 113
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_011081009.1 114 IQRRKI 119
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.4E-5924117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.4E-3625117IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3825117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3228117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSGEGTTGSG GGSSACGGES QRSVPTPFLT KTYQLVDDPS IDDFISWNED GTTFIVWRPA  60
EFARDLLPKY FKHNNFSSFV RQLNTYGFRK VVPDRWEFAN DCFRRGEKSL LRDIQRRKIS  120
AGAAAAATTA IECNEHSITV AVAPGTGIKI SPANSGDKQV LSSNSSPAAT AATPTPPVLR  180
AAEILEENER LRRENWQLRQ ELNQLRSLCG NIYNLMSIYA TNQCEAALPE ARALELMPET  240
PSKAEEAGAK AEEEEEMCPR IFGVSIRGSK RLKRTENGKD DAMRARGTDV KLEPSDAKSS  300
KNHEEPPRLD K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-271711719129Heat shock factor protein 1
5d5v_B7e-271711719129Heat shock factor protein 1
5d5v_D7e-271711719129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0482952e-56KJ048295.1 Sesamum indicum clone TilSSR_19496 microsatellite Sesame_19496 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081009.10.0heat stress transcription factor B-2b
SwissprotQ9T0D33e-90HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A2G9HZB71e-133A0A2G9HZB7_9LAMI; Uncharacterized protein
STRINGMigut.A00803.1.p1e-133(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-64HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]