PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080873.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 356aa    MW: 38995.1 Da    PI: 5.0688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19146196155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  XP_011080873.1 146 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 196
                     59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.47E-31146203No hitNo description
PfamPF008474.8E-12147196IPR001471AP2/ERF domain
PROSITE profilePS5103223.63147204IPR001471AP2/ERF domain
SMARTSM003804.9E-37147210IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21147204IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-30147204IPR001471AP2/ERF domain
PRINTSPR003673.9E-10148159IPR001471AP2/ERF domain
PRINTSPR003673.9E-10170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MLLQRGEEEE TMLSGARRGR IKYTEHVNQT TVVSRSDYPI SGRRSPFPAE MTTRTVRISV  60
TDADATDSSS DEEDGFSVKR RRVRKFINEV RIQPCCTDNG VVNGNASVNG SVNGVTKGSR  120
PAVSVLKRKK SGGKSESKVA KVGNGKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA  180
EEAAMVYDHA AIQLRGPDAL TNFSTPPAKD NKTSSGYNSG EESHNNAKSP KSVLRFVSAA  240
DSQAEAEAEA EAESSSVFSP SNDAVSKKEN DGEIFSEFSI FSPNLFTEFE NPVPVPDLFI  300
DQMGFSDNIF GMDFNCGTDM LIGSSTDPGF GSSTWQTDDY FQDFGDIFGS DPLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-20145203362ATERF1
3gcc_A7e-20145203362ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17882KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080873.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080873.10.0ethylene-responsive transcription factor CRF2
TrEMBLA0A2G9HGW11e-173A0A2G9HGW1_9LAMI; Uncharacterized protein
STRINGMigut.A00686.1.p1e-146(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-52cytokinin response factor 2