PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080854.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 314aa    MW: 35018.9 Da    PI: 9.1219
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-072872345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     rWT+ E + + +a +++  +   +W ++a++++ g+t  +++  + 
   XP_011080854.1 28 RWTPAENKAFENALALFDENtpdRWQKVAAMVP-GKTVGDVIRQYK 72
                     9********************************.****99998876 PP
2Myb_DNA-binding45.71.5e-14136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_011080854.1 136 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 180
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.052477IPR017884SANT domain
SMARTSM007172.9E-92577IPR001005SANT/Myb domain
SuperFamilySSF466894.74E-112782IPR009057Homeodomain-like
CDDcd001672.12E-72874No hitNo description
PfamPF002495.5E-62873IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-13127185IPR009057Homeodomain-like
PROSITE profilePS5129420.728129185IPR017930Myb domain
SuperFamilySSF466897.4E-17130184IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-17132184IPR006447Myb domain, plants
SMARTSM007173.2E-13133183IPR001005SANT/Myb domain
PfamPF002495.7E-13136180IPR001005SANT/Myb domain
CDDcd001672.67E-11136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSWGMEILSP SSYFSTSSWL LDESRSTRWT PAENKAFENA LALFDENTPD RWQKVAAMVP  60
GKTVGDVIRQ YKELEDDVSS IEAGLIPVPG YATSSPFTLE WGSGHGYEGF KQSYVAGGRK  120
SSSARPSEQE RKKGVPWTEE EHKLFLMGLK KYGKGDWRNI SRNFVITRTP TQVASHAQKY  180
FIRQLSGGKD KRRASIHDIT TVNLNDDQTP SPDNKKAPSP EQSTSVLGQQ SNSSAIQKLP  240
FQWNQTNNET VMGFGSPCNG NNVFTSPPYG VNSYGLNKIH SQHLQRGANS MHEPYLGSQN  300
MVFQMQSGLH YPNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1429941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080854.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080854.10.0transcription factor DIVARICATA isoform X1
RefseqXP_020550520.10.0transcription factor DIVARICATA isoform X2
SwissprotQ8S9H71e-173DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2G3CBQ61e-161A0A2G3CBQ6_CAPCH; Transcription factor DIVARICATA
STRINGPOPTR_0001s25590.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-111Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]