PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080800.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 266aa    MW: 30595.3 Da    PI: 10.5165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05205227123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C++sF+++  L  H r +
  XP_011080800.1 205 HECPWCDRSFTTRQGLSAHSRFC 227
                     79*****************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.99E-5140170No hitNo description
SMARTSM003555.5144166IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681144171IPR007087Zinc finger, C2H2
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-4204225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.5205225IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411205239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDRQSKAGLL ERNKVQNLPN NPPSDGKNSE PRIQIDLVYC LRRGWRTTNR RGKPGKSIVL  60
FQGPPEAAPV NYSVPPTKKR NREEEPVEDD GNRRNPSAKK LIIMEPGASS SSGRPIPQNG  120
AERDAESSRS AKGKAPAVTP TKQYFCDNCR KKFDSHFALG GHRAFHVRET RRWWGHQPSW  180
GALWYGQQGV PPNYQETVHV HREQHECPWC DRSFTTRQGL SAHSRFCRMR RQREENQKPA  240
VGRDFDLNQL PPEAFLPEEI LRLTWR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550519.10.0zinc finger protein ZAT2-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.14e-09C2H2-like zinc finger protein