PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080798.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 353aa    MW: 39949.1 Da    PI: 5.7929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12181227354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r h  +Er+RR+++ + f +L +l+P       kKl+Ka+iLe A++YIk L
  XP_011080798.1 181 REHLVAERKRREKLGQLFINLSKLVPGI-----KKLDKASILEDAIDYIKIL 227
                     56899*********************97.....7***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.031178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-10181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-17182251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-16182239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.12E-12183232No hitNo description
SMARTSM003536.0E-14184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEMKEENFGE IFGVNKADDD EIFTSHHNFS INTTNQQLQY SEYPPACWNN SCTMQQTMTT  60
TNVASSSAST SASACQLIYV ESKNVPVPVL HEESLVSSVD RAASTFHDQF VISPSYGLSA  120
NNLSSNTILN FSSPAVLVKD DSIIHNIKNP QYEYDLGTNG KHSWNRVNSG SVGGRSRLQA  180
REHLVAERKR REKLGQLFIN LSKLVPGIKK LDKASILEDA IDYIKILEER IQSLEKEEAT  240
KCWEVDRLDR ESSYMDGSTN ELSSAIKVKI MNRSVLIKML CKKHKGFMSR IHMEMEKMNL  300
CEEDIRVLPF GNNALDITIL AQMQSECSCN TVDIVEQLER AFLNRPHHDM QDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191ERKRRE
2187192RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080798.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080798.10.0transcription factor bHLH25-like
TrEMBLA0A2G9HXX12e-49A0A2G9HXX1_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88641628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-35bHLH family protein