PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080618.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 471aa    MW: 52705.8 Da    PI: 6.4021
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.32e-136464661374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl cA++v++g+ e+a+ +L+ +s+lasp+gd+mqR+aayfteALa r+++ +++l kal++++t+  +++ee+ ++klf+e +P+lk+s+
  XP_011080618.1  46 LIHLLLVCANHVAAGSIENANICLECISHLASPAGDTMQRIAAYFTEALADRILKGWPGLHKALNSTKTT--SVAEEILVHKLFYEFCPFLKLSY 138
                     689*************************************************************999998..5********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaIlea+ege+ vHiiD++  +++QW++Ll+aL++Rp+gpp++RiTgv++    ++e l ++++rL++ Ae+l++ f+fn+ ++++le+l+
  XP_011080618.1 139 VITNQAILEAMEGEKVVHIIDLNCFEPTQWISLLRALSARPDGPPHVRITGVHE----QNEVLDQMAHRLNEEAEKLDILFQFNP-IVSKLENLD 228
                     ******************************************************....9**************************.7999***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll..........................................................desvsles.erde 226
                     +++L vk+gEa+aV++vlqlh+ll                                                          +      s + ++
  XP_011080618.1 229 VKSLCVKTGEAVAVSSVLQLHSLLavnhemtqmdspylskspctlqrvlqtnpctlgeflekdvinacsaspdsassspiysAP-----SpKMTS 318
                     ************************************************************************997765533222.....144678 PP

            GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                     +L ++ +lsP+++vv+eqe++hn+ ++ +r++eal++y+alfd+le+++pr+s er+k+E++l+g+ei+n++aceg +r++rhe+l kW  rle 
  XP_011080618.1 319 FLYALCGLSPNLMVVTEQESNHNGFNLTDRITEALNFYAALFDCLESTMPRASIERQKIEKMLFGKEIKNIIACEGVDRTKRHEKLDKWIPRLEL 413
                     *********************************************************************************************** PP

            GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     aG+++vpls++a+ qa++ll+  + +gy++++e+ +++l+W+d+pL+svSaWr
  XP_011080618.1 414 AGLGKVPLSYHAMLQARRLLQSSNYHGYKIKDENSCFMLCWQDQPLFSVSAWR 466
                     ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.93720446IPR005202Transcription factor GRAS
PfamPF035147.0E-13446466IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MVQEEGSSSL SSSPLHMFSL MSLSPGLGSP FPWLREMGSE ERGLCLIHLL LVCANHVAAG  60
SIENANICLE CISHLASPAG DTMQRIAAYF TEALADRILK GWPGLHKALN STKTTSVAEE  120
ILVHKLFYEF CPFLKLSYVI TNQAILEAME GEKVVHIIDL NCFEPTQWIS LLRALSARPD  180
GPPHVRITGV HEQNEVLDQM AHRLNEEAEK LDILFQFNPI VSKLENLDVK SLCVKTGEAV  240
AVSSVLQLHS LLAVNHEMTQ MDSPYLSKSP CTLQRVLQTN PCTLGEFLEK DVINACSASP  300
DSASSSPIYS APSPKMTSFL YALCGLSPNL MVVTEQESNH NGFNLTDRIT EALNFYAALF  360
DCLESTMPRA SIERQKIEKM LFGKEIKNII ACEGVDRTKR HEKLDKWIPR LELAGLGKVP  420
LSYHAMLQAR RLLQSSNYHG YKIKDENSCF MLCWQDQPLF SVSAWRFRQY R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-61344687381Protein SCARECROW
5b3h_A1e-61344686380Protein SCARECROW
5b3h_D1e-61344686380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080617.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2G9GD240.0A0A2G9GD24_9LAMI; Uncharacterized protein
STRINGPOPTR_0001s06090.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]