PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011080617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 491aa MW: 55011.5 Da PI: 6.0853 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 446.1 | 2.3e-136 | 66 | 486 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl cA++v++g+ e+a+ +L+ +s+lasp+gd+mqR+aayfteALa r+++ +++l kal++++t+ +++ee+ ++klf+e +P+lk+s+ XP_011080617.1 66 LIHLLLVCANHVAAGSIENANICLECISHLASPAGDTMQRIAAYFTEALADRILKGWPGLHKALNSTKTT--SVAEEILVHKLFYEFCPFLKLSY 158 689*************************************************************999998..5********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +++NqaIlea+ege+ vHiiD++ +++QW++Ll+aL++Rp+gpp++RiTgv++ ++e l ++++rL++ Ae+l++ f+fn+ ++++le+l+ XP_011080617.1 159 VITNQAILEAMEGEKVVHIIDLNCFEPTQWISLLRALSARPDGPPHVRITGVHE----QNEVLDQMAHRLNEEAEKLDILFQFNP-IVSKLENLD 248 ******************************************************....9**************************.7999***** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrll..........................................................desvsles.erde 226 +++L vk+gEa+aV++vlqlh+ll + s + ++ XP_011080617.1 249 VKSLCVKTGEAVAVSSVLQLHSLLavnhemtqmdspylskspctlqrvlqtnpctlgeflekdvinacsaspdsassspiysAP-----SpKMTS 338 ************************************************************************997765533222.....144678 PP GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 +L ++ +lsP+++vv+eqe++hn+ ++ +r++eal++y+alfd+le+++pr+s er+k+E++l+g+ei+n++aceg +r++rhe+l kW rle XP_011080617.1 339 FLYALCGLSPNLMVVTEQESNHNGFNLTDRITEALNFYAALFDCLESTMPRASIERQKIEKMLFGKEIKNIIACEGVDRTKRHEKLDKWIPRLEL 433 *********************************************************************************************** PP GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aG+++vpls++a+ qa++ll+ + +gy++++e+ +++l+W+d+pL+svSaWr XP_011080617.1 434 AGLGKVPLSYHAMLQARRLLQSSNYHGYKIKDENSCFMLCWQDQPLFSVSAWR 486 ****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.937 | 40 | 466 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.1E-134 | 66 | 486 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MEQVAFELLQ IDLDKYLLAA MVQEEGSSSL SSSPLHMFSL MSLSPGLGSP FPWLREMGSE 60 ERGLCLIHLL LVCANHVAAG SIENANICLE CISHLASPAG DTMQRIAAYF TEALADRILK 120 GWPGLHKALN STKTTSVAEE ILVHKLFYEF CPFLKLSYVI TNQAILEAME GEKVVHIIDL 180 NCFEPTQWIS LLRALSARPD GPPHVRITGV HEQNEVLDQM AHRLNEEAEK LDILFQFNPI 240 VSKLENLDVK SLCVKTGEAV AVSSVLQLHS LLAVNHEMTQ MDSPYLSKSP CTLQRVLQTN 300 PCTLGEFLEK DVINACSASP DSASSSPIYS APSPKMTSFL YALCGLSPNL MVVTEQESNH 360 NGFNLTDRIT EALNFYAALF DCLESTMPRA SIERQKIEKM LFGKEIKNII ACEGVDRTKR 420 HEKLDKWIPR LELAGLGKVP LSYHAMLQAR RLLQSSNYHG YKIKDENSCF MLCWQDQPLF 480 SVSAWRFRQY R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-61 | 54 | 488 | 7 | 381 | Protein SCARECROW |
5b3h_A | 2e-61 | 54 | 488 | 6 | 380 | Protein SCARECROW |
5b3h_D | 2e-61 | 54 | 488 | 6 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011080617.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080617.1 | 0.0 | scarecrow-like protein 3 isoform X1 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2G9GD24 | 0.0 | A0A2G9GD24_9LAMI; Uncharacterized protein | ||||
STRING | POPTR_0001s06090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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