PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011080545.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 220aa MW: 25257.4 Da PI: 6.8059 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.2 | 2.4e-27 | 56 | 145 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF +r+ + ++s+ +g++ r++ C+k+g + + k k +e++++++ r gCka+l+ k+ek+g+w+vt++ +eHnH+l+ XP_011080545.1 56 RFYNDYARKVGFVMRIMQRRRSEVDGKTLARRLGCNKQGVSPSPKGKVGQEKKPQPNAREGCKATLMFKLEKSGRWVVTRFIKEHNHPLN 145 5******************************************99999****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-25 | 56 | 145 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MVEGNDSELD RGDWQYDDLE EDNLGQFEDN AKQVEGGEVL EPYVGMEFES EDDAKRFYND 60 YARKVGFVMR IMQRRRSEVD GKTLARRLGC NKQGVSPSPK GKVGQEKKPQ PNAREGCKAT 120 LMFKLEKSGR WVVTRFIKEH NHPLNVSAHE YNNLRDKDKK IQELAKELQR QEELAAAYRE 180 RLINLLADIE NKSDRLSTKV LAVVQNVRKA EAEALTISKA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011080545.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080545.1 | 1e-162 | protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A2G9G2Z9 | 1e-117 | A0A2G9G2Z9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N00673.1.p | 1e-107 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 8e-64 | FAR1 family protein |