PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011080516.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HD-ZIP

Protein Properties

Length: 845aa MW: 92378.6 Da PI: 6.3128

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011080516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.7e-19	25	83	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_011080516.1 25 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83 5679*****************************************************97 PP
2	START	178.8	3.1e-56	170	378	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+v+ ++ g+++l XP_011080516.1 170 VAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRSVDILNVLPTAngGTVELL 263 799*****************************************************.8888888888************9999** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++l+a+++l+p Rdf+ +Ry+ + +g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l+ XP_011080516.1 264 YMQLYAPTTLAPgRDFWLLRYTSVMDDGSLVVCERSLSNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLY 358 ***************************************9988899***************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s++a ++kt++a+l+++++ XP_011080516.1 359 ESSTALAQKTTMAALRQLRQ 378 **************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.953	20	84	IPR001356	Homeobox domain
SMART	SM00389	5.3E-16	22	88	IPR001356	Homeobox domain
CDD	cd00086	5.71E-17	25	85	No hit	No description
SuperFamily	SSF46689	5.99E-17	25	87	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-16	26	83	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-18	27	83	IPR009057	Homeodomain-like
CDD	cd14686	5.08E-6	77	116	No hit	No description
PROSITE profile	PS50848	25.927	160	375	IPR002913	START domain
CDD	cd08875	2.48E-77	164	380	No hit	No description
SMART	SM00234	1.9E-42	169	379	IPR002913	START domain
SuperFamily	SSF55961	1.92E-38	170	381	No hit	No description
Pfam	PF01852	1.4E-53	170	378	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.3E-24	170	376	IPR023393	START-like domain
Pfam	PF08670	6.5E-50	702	844	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence Send to blast
MAMSCKDSNK AAAAAAAAAS MDNGKYVRYT PEQVEALERL YHECPKPSSM RRQQLIRECP 60 ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QGVNRKLTAM NKLLMEENDR LQKQVSQLVY 120 ENGYFRQHAP SNALATKDTS CESVVTSGQQ HHLTPQHPPR DASPAGLLSV AEETLTEFLS 180 KATGTAVEWV QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDRPSWF 240 RDCRSVDILN VLPTANGGTV ELLYMQLYAP TTLAPGRDFW LLRYTSVMDD GSLVVCERSL 300 SNTQNGPSMP PVQNFVRAEM LPSGYLIRPC EGGGSIIHIV DHMNLEAWSV PEVLRPLYES 360 STALAQKTTM AALRQLRQIA QEISQSNVGN WGRRPAALRA LSHRLSRGFN EALNGLSDEG 420 WSLIANDGID DVTVLVNSNP EKLMGLNISF ANGYASVCNA VLCAKASMLL QNVPPAILVR 480 FLREHRSEWA DSSIDAYSAA AVKVGPNTLL GARVGNFGGQ VILPLAQTIE QEELLEVIKL 540 EGVAHSPEDA MMPRDIFLLQ LCGGMDETAV GTCAELIFAP IDASFADDAP LLPSGFRIIP 600 LDSSKEASSP NRTLDLASAL ESGTAGNKPS NDLAVTSCTT RSVMTIAFQF AFESHMQENV 660 ASMARQYLRS IISSVQRVAL ALSPSHPGSG LRSPLGTPEA HTLARWICQS YRSYMGVELL 720 KSSGEGSESI LKALWQYSDA ILCCSVKAMP VFTFANQAGL DMLETTLVAL QDISLEKIFD 780 DHGRKNLCSE FPQIMQQGFG TLQGGICLSS MSRPISYERA VAWKVLNEDD NAHCLCFMFI 840 NWSFV

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence Send to blast

MAMSCKDSNK AAAAAAAAAS MDNGKYVRYT PEQVEALERL YHECPKPSSM RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QGVNRKLTAM NKLLMEENDR LQKQVSQLVY  120
ENGYFRQHAP SNALATKDTS CESVVTSGQQ HHLTPQHPPR DASPAGLLSV AEETLTEFLS  180
KATGTAVEWV QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDRPSWF  240
RDCRSVDILN VLPTANGGTV ELLYMQLYAP TTLAPGRDFW LLRYTSVMDD GSLVVCERSL  300
SNTQNGPSMP PVQNFVRAEM LPSGYLIRPC EGGGSIIHIV DHMNLEAWSV PEVLRPLYES  360
STALAQKTTM AALRQLRQIA QEISQSNVGN WGRRPAALRA LSHRLSRGFN EALNGLSDEG  420
WSLIANDGID DVTVLVNSNP EKLMGLNISF ANGYASVCNA VLCAKASMLL QNVPPAILVR  480
FLREHRSEWA DSSIDAYSAA AVKVGPNTLL GARVGNFGGQ VILPLAQTIE QEELLEVIKL  540
EGVAHSPEDA MMPRDIFLLQ LCGGMDETAV GTCAELIFAP IDASFADDAP LLPSGFRIIP  600
LDSSKEASSP NRTLDLASAL ESGTAGNKPS NDLAVTSCTT RSVMTIAFQF AFESHMQENV  660
ASMARQYLRS IISSVQRVAL ALSPSHPGSG LRSPLGTPEA HTLARWICQS YRSYMGVELL  720
KSSGEGSESI LKALWQYSDA ILCCSVKAMP VFTFANQAGL DMLETTLVAL QDISLEKIFD  780
DHGRKNLCSE FPQIMQQGFG TLQGGICLSS MSRPISYERA VAWKVLNEDD NAHCLCFMFI  840
NWSFV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011080516.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080516.1	0.0	homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A1V0JHU3	0.0	A0A1V0JHU3_SESIN; Homeobox-leucine zipper protein ATHB-15
STRING	cassava4.1_001674m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]