PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080498.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 537aa    MW: 58665.2 Da    PI: 4.9019
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080498.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569e-183986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l
   XP_011080498.1 39 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 86
                     79******************************************9986 PP
2Myb_DNA-binding506.6e-1692135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ l++++++++G++ W++ a++++ gRt++++k++w++
   XP_011080498.1  92 KGAFSPEEERLIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 135
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5273486IPR017930Myb domain
SuperFamilySSF466894.49E-3037133IPR009057Homeodomain-like
SMARTSM007171.7E-133888IPR001005SANT/Myb domain
PfamPF002494.1E-153986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-244093IPR009057Homeodomain-like
CDDcd001675.13E-114186No hitNo description
PROSITE profilePS5129425.98687141IPR017930Myb domain
SMARTSM007171.2E-1691139IPR001005SANT/Myb domain
PfamPF002493.3E-1592135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2594140IPR009057Homeodomain-like
CDDcd001673.13E-1294135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MSMTSESNER SMPKNGVDSP AADDANSGGY VGGHGPLKKG PWTSAEDAIL VEYVTKHGEG  60
NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFSPEEE RLIIELHAKM GNKWARMAAE  120
LPGRTDNEIK NYWNTRIKRR QRAGLPIYPP DISLRPSKEN QQSDDISSFS SGDSHYPDFM  180
PVNNFEIPAV EFKNLELNQQ LYPPALLDIP ATGLLDVPAS SLLAQGLPPS YPNKSLLSTI  240
HPSKRLRGSE PLFPGLCATM GNSIPGRSQY QNDGPMQIAQ SFINSSAYDH TSFSSVLSGS  300
HAILNGNPSS SEPDWAMKLE LPSLQTQVGG WGSPSSPLPN LESVDTLIQT PPTEHTLSYD  360
HPPRNSGLLD AVLYESQTMK QPKYSSHLAD MLVDIMDTSS QYFHETDWEA YGESTTPLGH  420
SSSSIFSEST PTNGNSFDEP QSVETIPGCK LEETMQSDNK AETTNNMIFS RPDLLPASDC  480
YSLSEGPTMD HSLLKDAIGT LLVDDLSRDC KQTETSATSA PQCCGHDSCA WNAMSTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32371405107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080498.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080497.10.0transcription factor GAMYB-like isoform X1
TrEMBLA0A0K1ETQ40.0A0A0K1ETQ4_TECGR; MYB transcription factor 4
TrEMBLA0A2G9GLK00.0A0A2G9GLK0_9LAMI; Transcription factor, Myb superfamily
STRINGXP_009596031.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.35e-89myb domain protein 33