PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080497.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 547aa    MW: 59856.6 Da    PI: 5.0494
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.2e-184996148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l
   XP_011080497.1 49 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 96
                     79******************************************9986 PP
2Myb_DNA-binding506.8e-16102145146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ l++++++++G++ W++ a++++ gRt++++k++w++
   XP_011080497.1 102 KGAFSPEEERLIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 145
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5274496IPR017930Myb domain
SuperFamilySSF466894.49E-3047143IPR009057Homeodomain-like
SMARTSM007171.7E-134898IPR001005SANT/Myb domain
PfamPF002494.2E-154996IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2450103IPR009057Homeodomain-like
CDDcd001675.30E-115196No hitNo description
PROSITE profilePS5129425.98697151IPR017930Myb domain
SMARTSM007171.2E-16101149IPR001005SANT/Myb domain
PfamPF002493.3E-15102145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-25104150IPR009057Homeodomain-like
CDDcd001673.24E-12104145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MENVYKKVKA MSMTSESNER SMPKNGVDSP AADDANSGGY VGGHGPLKKG PWTSAEDAIL  60
VEYVTKHGEG NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFSPEEE RLIIELHAKM  120
GNKWARMAAE LPGRTDNEIK NYWNTRIKRR QRAGLPIYPP DISLRPSKEN QQSDDISSFS  180
SGDSHYPDFM PVNNFEIPAV EFKNLELNQQ LYPPALLDIP ATGLLDVPAS SLLAQGLPPS  240
YPNKSLLSTI HPSKRLRGSE PLFPGLCATM GNSIPGRSQY QNDGPMQIAQ SFINSSAYDH  300
TSFSSVLSGS HAILNGNPSS SEPDWAMKLE LPSLQTQVGG WGSPSSPLPN LESVDTLIQT  360
PPTEHTLSYD HPPRNSGLLD AVLYESQTMK QPKYSSHLAD MLVDIMDTSS QYFHETDWEA  420
YGESTTPLGH SSSSIFSEST PTNGNSFDEP QSVETIPGCK LEETMQSDNK AETTNNMIFS  480
RPDLLPASDC YSLSEGPTMD HSLLKDAIGT LLVDDLSRDC KQTETSATSA PQCCGHDSCA  540
WNAMSTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32471505107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080497.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080497.10.0transcription factor GAMYB-like isoform X1
TrEMBLA0A0K1ETQ40.0A0A0K1ETQ4_TECGR; MYB transcription factor 4
TrEMBLA0A2G9GLK00.0A0A2G9GLK0_9LAMI; Transcription factor, Myb superfamily
STRINGXP_009596031.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.37e-89myb domain protein 33