PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YC
Protein Properties Length: 277aa    MW: 30588.8 Da    PI: 4.8838
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC62.11.1e-196861898
           NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++++P arikki++adedv +i+  +P l+ska elf+ +l  r++  + +   +t++   ++++v+r ++fdfl d+v +
  XP_011080490.1  6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTVNSLHLKQCVQRFNVFDFLKDTVSK 86
                    5789*************************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-26272IPR009072Histone-fold
SuperFamilySSF471138.93E-20388IPR009072Histone-fold
PfamPF008081.1E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKRGAK  60
TVNSLHLKQC VQRFNVFDFL KDTVSKVPDL GGSDAATEDK SATKRRKISE GEDGNTDECK  120
RIRLHEAGDA NSNGRGRGRG RGRGRGRGSR TLERESVVQY EKFEDATDGC HQHDENQKED  180
YVGLDNVAGA ADSRTTGIKD EDESVRNFDL NVELNENGDS TSTLAGAPSQ SSMKPAAGLK  240
HEDIPGWSLD DVNRLAVDPV QLANFNVGVE DEDYDEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136146RGRGRGRGRGR
2138147RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080490.10.0dr1-associated corepressor
TrEMBLA0A2G9I5971e-128A0A2G9I597_9LAMI; Uncharacterized protein
STRINGMigut.D00705.1.p1e-104(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.19e-68NF-YC family protein