PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080382.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 470aa    MW: 52948 Da    PI: 6.0338
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080382.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS467.66.8e-143464671374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA++v+sg+le+a+ +L ++s+laspdgd+mqR+a+yf eALa r++r+++++yka+++++ s   ++ee+ + k+f+e  P++k+++
  XP_011080382.1  46 LIHLLVTCANHVASGSLENANIALDQISHLASPDGDTMQRIASYFSEALADRILRTWPGVYKAFRSTRIS--VVAEEILVKKMFFEFLPFMKVAF 138
                     689************************************************************9998887..6********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     ++ NqaI ea+ege++vH+iD+++++++QW aL++ L++Rpegpp+lRiTg+++    +ke le++++ L + Ae+l++pf+fn+ v+++le+l+
  XP_011080382.1 139 VISNQAIIEAMEGEKMVHVIDLNATEPAQWCALIRDLSARPEGPPHLRITGISQ----QKEVLEQMAHILIEEAERLDLPFQFNP-VVSKLENLD 228
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.......................................................desvsles..erdevL 228
                     +e+Lrvk+gEala+++++qlh+ll                                                          +s +s  ++d++L
  XP_011080382.1 229 IEKLRVKTGEALAISSIMQLHSLLasnndvrnrspstpinaigihlqrvaqmnqntlgdllekdmisgysprndsasssP--LSPTSspYIDTFL 321
                     ************************************************************************99988442..333334579**** PP

            GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                     ++++ lsPkv+vv+eq++dhn++s++er++e+l++y+alfd+le+ lpr+s er k+E+ llg+ei+n++acegaer++rhe+lekW++r++ aG
  XP_011080382.1 322 STLWALSPKVMVVMEQDSDHNGKSLMERLSESLYFYAALFDCLESALPRASLERLKMEKSLLGEEIKNIIACEGAERKQRHEKLEKWNQRFDLAG 416
                     *********************************************************************************************** PP

            GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     F++vpls++a+ qak+ll+ ++ dgy+++ee+g++v++W+drpL+svSaWr
  XP_011080382.1 417 FGNVPLSYYAMLQAKRLLQSFNCDGYKIKEENGCVVICWQDRPLFSVSAWR 467
                     **************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.41620447IPR005202Transcription factor GRAS
PfamPF035142.4E-14046467IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MFQEDGSSSV TSSPLQMFPM MSLSPGLTSP YPLLKELKPE ERGLYLIHLL VTCANHVASG  60
SLENANIALD QISHLASPDG DTMQRIASYF SEALADRILR TWPGVYKAFR STRISVVAEE  120
ILVKKMFFEF LPFMKVAFVI SNQAIIEAME GEKMVHVIDL NATEPAQWCA LIRDLSARPE  180
GPPHLRITGI SQQKEVLEQM AHILIEEAER LDLPFQFNPV VSKLENLDIE KLRVKTGEAL  240
AISSIMQLHS LLASNNDVRN RSPSTPINAI GIHLQRVAQM NQNTLGDLLE KDMISGYSPR  300
NDSASSSPLS PTSSPYIDTF LSTLWALSPK VMVVMEQDSD HNGKSLMERL SESLYFYAAL  360
FDCLESALPR ASLERLKMEK SLLGEEIKNI IACEGAERKQ RHEKLEKWNQ RFDLAGFGNV  420
PLSYYAMLQA KRLLQSFNCD GYKIKEENGC VVICWQDRPL FSVSAWRFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-67294691380Protein SCARECROW
5b3h_D6e-67294691380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080382.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080382.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2G9HIR50.0A0A2G9HIR5_9LAMI; Uncharacterized protein
STRINGMigut.N02362.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]