PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011080230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 283aa MW: 30444.9 Da PI: 9.7508 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.6 | 2.7e-10 | 250 | 274 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +fa+ G C++G+ C FaHg XP_011080230.1 250 YKTKLCENFAK-GPCNFGNHCLFAHG 274 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.714 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-4 | 42 | 62 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.49 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.681 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-7 | 100 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-8 | 100 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 6.72E-15 | 150 | 229 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 3.8E-15 | 157 | 227 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.2E-10 | 158 | 228 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.271 | 159 | 223 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.0E-9 | 161 | 224 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 5.08E-13 | 161 | 224 | No hit | No description |
SuperFamily | SSF90229 | 1.57E-8 | 248 | 280 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 249 | 276 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-4 | 249 | 275 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-13 | 249 | 281 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-7 | 250 | 274 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MELGGSKKRG EDEGDGTGDG GSKRFKQEKE SITTGIRRTV LPCSWFFSPS GCSLGNRCQF 60 LHYVPGGIKA VTQMLGRNPA LPAAPSHPAV PPSFRLASAI QPQFCYRFNT AGGCMYGKRC 120 YFLHSKHELG RSTMPFHGNL HAMEPIPPNR GAAASFEASA TVKISIDASM AGAVIGVGGD 180 MSKKICRLTG VKLSIKDHES DPKLRNVELK GTFDQIGQAS QMIHQLIIHV SASSGSGIKT 240 PASSASRKYY KTKLCENFAK GPCNFGNHCL FAHGAEELRK PEV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011080230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080230.1 | 0.0 | zinc finger CCCH domain-containing protein 31-like | ||||
TrEMBL | A0A2G9HN76 | 1e-108 | A0A2G9HN76_9LAMI; Uncharacterized protein | ||||
STRING | XP_009803026.1 | 1e-100 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-50 | C3H family protein |