PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011079918.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 360aa    MW: 41649.9 Da    PI: 5.5518
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011079918.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.3e-36511432103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d ++++++sw++ g+sfvv+d++ f+++vL++yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++sF +g+k+ll++
  XP_011079918.1  51 FLTKTYEMVDDFSTDRIVSWNRGGHSFVVWDPHAFSTTVLSRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANDSFLRGQKHLLRN 136
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr+k +
  XP_011079918.1 137 IKRRKAT 143
                     ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.6E-3947140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5947140IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.54E-3547140IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.9E-3251140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-185174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434090114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDPLIFPVKE EYQSGSSSWQ QPSGVAPPPS ENGVGRPQPM EGLHDMGPPP FLTKTYEMVD  60
DFSTDRIVSW NRGGHSFVVW DPHAFSTTVL SRYFKHNNFS SFVRQLNTYG FRKIDPDKWE  120
FANDSFLRGQ KHLLRNIKRR KATTQPSPPP HAIGPCVELG RFGLDAEIDS LRRDKRVLTM  180
ELIKLRQQQQ NTRDYLQQME LKLQGTERKQ QQMMSFLARA MQNPEFIHQL VQHKEKRKEL  240
EEAMSKKRRR PIEAGESSRM NDVKVEPSEF GDRYGFQVSE LEALALEMQG FGRARREQEE  300
IEEEVVGLES YDKELDQGFW EELLNEGLDE VGIGKTEEEG VEEDVRVLAD RLGFLGSRTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-244914027129Heat shock factor protein 1
5d5v_B3e-244914027129Heat shock factor protein 1
5d5v_D3e-244914027129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235249KRKELEEAMSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011079918.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079918.10.0heat stress transcription factor A-7a
SwissprotQ9LUH81e-123HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2G9GNX31e-176A0A2G9GNX3_9LAMI; Heat shock transcription factor
STRINGEOX946441e-163(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-122heat shock transcription factor A6B